Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS14985

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS14975 and SGL_RS14980 are separated by 193 nucleotidesSGL_RS14980 and SGL_RS14985 are separated by 59 nucleotidesSGL_RS14985 and SGL_RS14990 are separated by 74 nucleotidesSGL_RS14990 and SGL_RS14995 are separated by 198 nucleotidesSGL_RS14995 and SGL_RS15000 are separated by 57 nucleotides SGL_RS14975: SGL_RS14975 - translation initiation factor, at 2,812,385 to 2,812,720 _RS14975 SGL_RS14980: SGL_RS14980 - phosphatase PAP2 family protein, at 2,812,914 to 2,813,594 _RS14980 SGL_RS14985: SGL_RS14985 - DNA polymerase III subunit delta, at 2,813,654 to 2,814,655 _RS14985 SGL_RS14990: SGL_RS14990 - hypothetical protein, at 2,814,730 to 2,814,924 _RS14990 SGL_RS14995: SGL_RS14995 - hypothetical protein, at 2,815,123 to 2,815,509 _RS14995 SGL_RS15000: SGL_RS15000 - DUF2752 domain-containing protein, at 2,815,567 to 2,816,013 _RS15000 Position (kb) 2813 2814 2815Strain fitness (log2 ratio) -1 0 1at 2812.715 kb on + strandat 2812.723 kb on - strandat 2812.723 kb on - strandat 2814.655 kb on + strandat 2814.692 kb on + strandat 2814.694 kb on - strandat 2814.700 kb on - strandat 2814.778 kb on + strand, within SGL_RS14990at 2814.789 kb on + strand, within SGL_RS14990at 2814.797 kb on - strand, within SGL_RS14990at 2814.802 kb on - strand, within SGL_RS14990at 2814.802 kb on - strand, within SGL_RS14990at 2814.928 kb on + strandat 2814.951 kb on - strandat 2815.002 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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2,812,715 + -0.7
2,812,723 - +0.7
2,812,723 - +0.5
2,814,655 + -1.0
2,814,692 + +1.3
2,814,694 - -1.2
2,814,700 - +0.5
2,814,778 + SGL_RS14990 0.25 -0.3
2,814,789 + SGL_RS14990 0.30 +0.8
2,814,797 - SGL_RS14990 0.34 -0.9
2,814,802 - SGL_RS14990 0.37 -0.8
2,814,802 - SGL_RS14990 0.37 -0.3
2,814,928 + -0.5
2,814,951 - -0.2
2,815,002 - +1.1

Or see this region's nucleotide sequence