Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS14865

Experiment: high light; bubbling

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS14860 and SGL_RS14865 are separated by 157 nucleotidesSGL_RS14865 and SGL_RS14870 are separated by 5 nucleotidesSGL_RS14870 and SGL_RS14875 are separated by 49 nucleotides SGL_RS14860: SGL_RS14860 - 8-amino-7-oxononanoate synthase, at 2,791,820 to 2,793,001 _RS14860 SGL_RS14865: SGL_RS14865 - type I methionyl aminopeptidase, at 2,793,159 to 2,793,920 _RS14865 SGL_RS14870: SGL_RS14870 - thiol-disulfide oxidoreductase DCC family protein, at 2,793,926 to 2,794,381 _RS14870 SGL_RS14875: SGL_RS14875 - NUDIX hydrolase, at 2,794,431 to 2,794,880 _RS14875 Position (kb) 2793 2794Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2792.228 kb on - strand, within SGL_RS14860at 2792.501 kb on - strand, within SGL_RS14860at 2792.542 kb on + strand, within SGL_RS14860at 2792.555 kb on - strand, within SGL_RS14860at 2792.560 kb on - strand, within SGL_RS14860at 2792.560 kb on - strand, within SGL_RS14860at 2792.560 kb on - strand, within SGL_RS14860at 2792.643 kb on + strand, within SGL_RS14860at 2792.806 kb on + strand, within SGL_RS14860at 2792.932 kb on + strandat 2792.946 kb on + strandat 2793.026 kb on - strandat 2793.065 kb on + strandat 2793.177 kb on - strandat 2793.231 kb on + strandat 2793.481 kb on - strand, within SGL_RS14865at 2793.850 kb on - strandat 2794.007 kb on + strand, within SGL_RS14870at 2794.061 kb on + strand, within SGL_RS14870at 2794.069 kb on - strand, within SGL_RS14870at 2794.069 kb on - strand, within SGL_RS14870at 2794.121 kb on + strand, within SGL_RS14870at 2794.415 kb on + strandat 2794.468 kb on - strandat 2794.532 kb on + strand, within SGL_RS14875at 2794.581 kb on - strand, within SGL_RS14875at 2794.640 kb on + strand, within SGL_RS14875at 2794.789 kb on + strand, within SGL_RS14875

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
remove
2,792,228 - SGL_RS14860 0.35 -0.5
2,792,501 - SGL_RS14860 0.58 +0.6
2,792,542 + SGL_RS14860 0.61 -1.1
2,792,555 - SGL_RS14860 0.62 +2.0
2,792,560 - SGL_RS14860 0.63 -0.5
2,792,560 - SGL_RS14860 0.63 -0.2
2,792,560 - SGL_RS14860 0.63 -0.4
2,792,643 + SGL_RS14860 0.70 +1.1
2,792,806 + SGL_RS14860 0.83 -1.0
2,792,932 + -1.6
2,792,946 + -0.7
2,793,026 - +0.8
2,793,065 + +3.7
2,793,177 - -2.2
2,793,231 + -1.3
2,793,481 - SGL_RS14865 0.42 -2.2
2,793,850 - +0.6
2,794,007 + SGL_RS14870 0.18 -2.1
2,794,061 + SGL_RS14870 0.30 -1.1
2,794,069 - SGL_RS14870 0.31 -0.5
2,794,069 - SGL_RS14870 0.31 -0.6
2,794,121 + SGL_RS14870 0.43 -0.4
2,794,415 + -0.8
2,794,468 - +0.7
2,794,532 + SGL_RS14875 0.22 -0.1
2,794,581 - SGL_RS14875 0.33 +0.5
2,794,640 + SGL_RS14875 0.46 -2.1
2,794,789 + SGL_RS14875 0.80 +0.1

Or see this region's nucleotide sequence