Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS14630

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS14620 and SGL_RS14625 are separated by 43 nucleotidesSGL_RS14625 and SGL_RS14630 are separated by 198 nucleotidesSGL_RS14630 and SGL_RS18425 are separated by 120 nucleotidesSGL_RS18425 and SGL_RS14635 are separated by 207 nucleotides SGL_RS14620: SGL_RS14620 - CoB--CoM heterodisulfide reductase iron-sulfur subunit B family protein, at 2,733,081 to 2,733,986 _RS14620 SGL_RS14625: SGL_RS14625 - YggT family protein, at 2,734,030 to 2,734,323 _RS14625 SGL_RS14630: SGL_RS14630 - pentapeptide repeat-containing protein, at 2,734,522 to 2,735,301 _RS14630 SGL_RS18425: SGL_RS18425 - NAD(P)H dehydrogenase subunit NdhS, at 2,735,422 to 2,735,598 _RS18425 SGL_RS14635: SGL_RS14635 - ABC transporter ATP-binding protein/permease, at 2,735,806 to 2,737,791 _RS14635 Position (kb) 2734 2735 2736Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2733.537 kb on + strand, within SGL_RS14620at 2733.649 kb on + strand, within SGL_RS14620at 2733.650 kb on - strand, within SGL_RS14620at 2733.694 kb on + strand, within SGL_RS14620at 2733.795 kb on + strand, within SGL_RS14620at 2733.796 kb on - strand, within SGL_RS14620at 2733.855 kb on + strand, within SGL_RS14620at 2733.855 kb on + strand, within SGL_RS14620at 2733.870 kb on + strand, within SGL_RS14620at 2733.878 kb on - strand, within SGL_RS14620at 2733.890 kb on + strand, within SGL_RS14620at 2733.978 kb on - strandat 2734.062 kb on - strand, within SGL_RS14625at 2734.218 kb on + strand, within SGL_RS14625at 2734.297 kb on - strandat 2734.447 kb on + strandat 2734.449 kb on + strandat 2734.449 kb on + strandat 2734.457 kb on - strandat 2734.526 kb on + strandat 2734.803 kb on - strand, within SGL_RS14630at 2734.808 kb on - strand, within SGL_RS14630at 2734.822 kb on + strand, within SGL_RS14630at 2734.864 kb on + strand, within SGL_RS14630at 2734.889 kb on - strand, within SGL_RS14630at 2734.910 kb on + strand, within SGL_RS14630at 2735.031 kb on + strand, within SGL_RS14630at 2735.159 kb on - strand, within SGL_RS14630at 2735.353 kb on + strandat 2735.880 kb on + strandat 2735.880 kb on + strandat 2735.892 kb on + strandat 2735.900 kb on - strandat 2735.902 kb on + strandat 2736.114 kb on + strand, within SGL_RS14635at 2736.172 kb on + strand, within SGL_RS14635at 2736.199 kb on + strand, within SGL_RS14635at 2736.255 kb on + strand, within SGL_RS14635

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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2,733,537 + SGL_RS14620 0.50 +0.4
2,733,649 + SGL_RS14620 0.63 -0.4
2,733,650 - SGL_RS14620 0.63 -0.3
2,733,694 + SGL_RS14620 0.68 -0.6
2,733,795 + SGL_RS14620 0.79 -1.8
2,733,796 - SGL_RS14620 0.79 -0.3
2,733,855 + SGL_RS14620 0.85 -0.4
2,733,855 + SGL_RS14620 0.85 -0.9
2,733,870 + SGL_RS14620 0.87 -0.8
2,733,878 - SGL_RS14620 0.88 -0.2
2,733,890 + SGL_RS14620 0.89 +1.0
2,733,978 - -1.3
2,734,062 - SGL_RS14625 0.11 +1.9
2,734,218 + SGL_RS14625 0.64 -1.4
2,734,297 - -0.6
2,734,447 + +0.0
2,734,449 + -1.0
2,734,449 + +0.2
2,734,457 - -1.6
2,734,526 + -3.4
2,734,803 - SGL_RS14630 0.36 -3.2
2,734,808 - SGL_RS14630 0.37 -2.6
2,734,822 + SGL_RS14630 0.38 -2.5
2,734,864 + SGL_RS14630 0.44 -2.1
2,734,889 - SGL_RS14630 0.47 -3.5
2,734,910 + SGL_RS14630 0.50 -1.1
2,735,031 + SGL_RS14630 0.65 -0.5
2,735,159 - SGL_RS14630 0.82 -2.8
2,735,353 + -1.2
2,735,880 + -1.8
2,735,880 + -1.9
2,735,892 + -1.5
2,735,900 - +0.0
2,735,902 + -0.5
2,736,114 + SGL_RS14635 0.16 -1.7
2,736,172 + SGL_RS14635 0.18 -1.3
2,736,199 + SGL_RS14635 0.20 +3.0
2,736,255 + SGL_RS14635 0.23 +0.4

Or see this region's nucleotide sequence