Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS14620 and SGL_RS14625 are separated by 43 nucleotides SGL_RS14625 and SGL_RS14630 are separated by 198 nucleotides SGL_RS14630 and SGL_RS18425 are separated by 120 nucleotides SGL_RS18425 and SGL_RS14635 are separated by 207 nucleotides
SGL_RS14620: SGL_RS14620 - CoB--CoM heterodisulfide reductase iron-sulfur subunit B family protein, at 2,733,081 to 2,733,986
_RS14620
SGL_RS14625: SGL_RS14625 - YggT family protein, at 2,734,030 to 2,734,323
_RS14625
SGL_RS14630: SGL_RS14630 - pentapeptide repeat-containing protein, at 2,734,522 to 2,735,301
_RS14630
SGL_RS18425: SGL_RS18425 - NAD(P)H dehydrogenase subunit NdhS, at 2,735,422 to 2,735,598
_RS18425
SGL_RS14635: SGL_RS14635 - ABC transporter ATP-binding protein/permease, at 2,735,806 to 2,737,791
_RS14635
Position (kb)
2734
2735
2736 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2733.537 kb on + strand, within SGL_RS14620 at 2733.649 kb on + strand, within SGL_RS14620 at 2733.650 kb on - strand, within SGL_RS14620 at 2733.694 kb on + strand, within SGL_RS14620 at 2733.795 kb on + strand, within SGL_RS14620 at 2733.796 kb on - strand, within SGL_RS14620 at 2733.855 kb on + strand, within SGL_RS14620 at 2733.855 kb on + strand, within SGL_RS14620 at 2733.870 kb on + strand, within SGL_RS14620 at 2733.878 kb on - strand, within SGL_RS14620 at 2733.890 kb on + strand, within SGL_RS14620 at 2733.978 kb on - strand at 2734.062 kb on - strand, within SGL_RS14625 at 2734.218 kb on + strand, within SGL_RS14625 at 2734.297 kb on - strand at 2734.447 kb on + strand at 2734.449 kb on + strand at 2734.449 kb on + strand at 2734.457 kb on - strand at 2734.526 kb on + strand at 2734.803 kb on - strand, within SGL_RS14630 at 2734.808 kb on - strand, within SGL_RS14630 at 2734.822 kb on + strand, within SGL_RS14630 at 2734.864 kb on + strand, within SGL_RS14630 at 2734.889 kb on - strand, within SGL_RS14630 at 2734.910 kb on + strand, within SGL_RS14630 at 2735.031 kb on + strand, within SGL_RS14630 at 2735.159 kb on - strand, within SGL_RS14630 at 2735.353 kb on + strand at 2735.880 kb on + strand at 2735.880 kb on + strand at 2735.892 kb on + strand at 2735.900 kb on - strand at 2735.902 kb on + strand at 2736.114 kb on + strand, within SGL_RS14635 at 2736.172 kb on + strand, within SGL_RS14635 at 2736.199 kb on + strand, within SGL_RS14635 at 2736.255 kb on + strand, within SGL_RS14635
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 2,733,537 + SGL_RS14620 0.50 +0.4 2,733,649 + SGL_RS14620 0.63 -0.4 2,733,650 - SGL_RS14620 0.63 -0.3 2,733,694 + SGL_RS14620 0.68 -0.6 2,733,795 + SGL_RS14620 0.79 -1.8 2,733,796 - SGL_RS14620 0.79 -0.3 2,733,855 + SGL_RS14620 0.85 -0.4 2,733,855 + SGL_RS14620 0.85 -0.9 2,733,870 + SGL_RS14620 0.87 -0.8 2,733,878 - SGL_RS14620 0.88 -0.2 2,733,890 + SGL_RS14620 0.89 +1.0 2,733,978 - -1.3 2,734,062 - SGL_RS14625 0.11 +1.9 2,734,218 + SGL_RS14625 0.64 -1.4 2,734,297 - -0.6 2,734,447 + +0.0 2,734,449 + -1.0 2,734,449 + +0.2 2,734,457 - -1.6 2,734,526 + -3.4 2,734,803 - SGL_RS14630 0.36 -3.2 2,734,808 - SGL_RS14630 0.37 -2.6 2,734,822 + SGL_RS14630 0.38 -2.5 2,734,864 + SGL_RS14630 0.44 -2.1 2,734,889 - SGL_RS14630 0.47 -3.5 2,734,910 + SGL_RS14630 0.50 -1.1 2,735,031 + SGL_RS14630 0.65 -0.5 2,735,159 - SGL_RS14630 0.82 -2.8 2,735,353 + -1.2 2,735,880 + -1.8 2,735,880 + -1.9 2,735,892 + -1.5 2,735,900 - +0.0 2,735,902 + -0.5 2,736,114 + SGL_RS14635 0.16 -1.7 2,736,172 + SGL_RS14635 0.18 -1.3 2,736,199 + SGL_RS14635 0.20 +3.0 2,736,255 + SGL_RS14635 0.23 +0.4
Or see this region's nucleotide sequence