Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS14595 and SGL_RS14600 are separated by 103 nucleotides SGL_RS14600 and SGL_RS14605 are separated by 616 nucleotides
SGL_RS14595: SGL_RS14595 - phospholipase D-like domain-containing protein, at 2,727,047 to 2,728,708
_RS14595
SGL_RS14600: SGL_RS14600 - DUF4912 domain-containing protein, at 2,728,812 to 2,730,071
_RS14600
SGL_RS14605: SGL_RS14605 - ergothioneine biosynthesis protein EgtC, at 2,730,688 to 2,731,563
_RS14605
Position (kb)
2728
2729
2730
2731 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2727.814 kb on + strand, within SGL_RS14595 at 2727.822 kb on - strand, within SGL_RS14595 at 2727.829 kb on + strand, within SGL_RS14595 at 2727.861 kb on - strand, within SGL_RS14595 at 2728.178 kb on - strand, within SGL_RS14595 at 2728.242 kb on - strand, within SGL_RS14595 at 2728.320 kb on - strand, within SGL_RS14595 at 2728.399 kb on + strand, within SGL_RS14595 at 2728.436 kb on + strand, within SGL_RS14595 at 2728.468 kb on - strand, within SGL_RS14595 at 2728.552 kb on - strand at 2728.640 kb on + strand at 2728.900 kb on - strand at 2729.139 kb on + strand, within SGL_RS14600 at 2729.227 kb on - strand, within SGL_RS14600 at 2729.261 kb on + strand, within SGL_RS14600 at 2729.328 kb on + strand, within SGL_RS14600 at 2729.339 kb on - strand, within SGL_RS14600 at 2729.424 kb on + strand, within SGL_RS14600 at 2729.530 kb on - strand, within SGL_RS14600 at 2729.650 kb on - strand, within SGL_RS14600 at 2729.673 kb on - strand, within SGL_RS14600 at 2729.678 kb on - strand, within SGL_RS14600 at 2729.693 kb on + strand, within SGL_RS14600 at 2729.721 kb on - strand, within SGL_RS14600 at 2729.825 kb on - strand, within SGL_RS14600 at 2729.849 kb on - strand, within SGL_RS14600 at 2730.006 kb on + strand at 2730.233 kb on + strand at 2730.241 kb on - strand at 2730.241 kb on - strand at 2730.622 kb on + strand at 2730.875 kb on - strand, within SGL_RS14605 at 2730.932 kb on - strand, within SGL_RS14605 at 2730.935 kb on + strand, within SGL_RS14605 at 2731.016 kb on - strand, within SGL_RS14605
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 2,727,814 + SGL_RS14595 0.46 -0.6 2,727,822 - SGL_RS14595 0.47 +1.1 2,727,829 + SGL_RS14595 0.47 -0.4 2,727,861 - SGL_RS14595 0.49 +0.2 2,728,178 - SGL_RS14595 0.68 -1.9 2,728,242 - SGL_RS14595 0.72 +0.7 2,728,320 - SGL_RS14595 0.77 -0.0 2,728,399 + SGL_RS14595 0.81 +2.0 2,728,436 + SGL_RS14595 0.84 +0.1 2,728,468 - SGL_RS14595 0.85 +0.5 2,728,552 - -0.7 2,728,640 + -0.3 2,728,900 - +0.5 2,729,139 + SGL_RS14600 0.26 -1.9 2,729,227 - SGL_RS14600 0.33 -3.2 2,729,261 + SGL_RS14600 0.36 -2.2 2,729,328 + SGL_RS14600 0.41 -0.7 2,729,339 - SGL_RS14600 0.42 -4.0 2,729,424 + SGL_RS14600 0.49 -0.5 2,729,530 - SGL_RS14600 0.57 -3.8 2,729,650 - SGL_RS14600 0.67 -0.7 2,729,673 - SGL_RS14600 0.68 -2.7 2,729,678 - SGL_RS14600 0.69 -4.1 2,729,693 + SGL_RS14600 0.70 -4.0 2,729,721 - SGL_RS14600 0.72 -2.5 2,729,825 - SGL_RS14600 0.80 +0.4 2,729,849 - SGL_RS14600 0.82 -1.5 2,730,006 + -2.5 2,730,233 + -0.0 2,730,241 - -2.3 2,730,241 - -0.7 2,730,622 + -0.1 2,730,875 - SGL_RS14605 0.21 +0.6 2,730,932 - SGL_RS14605 0.28 +1.5 2,730,935 + SGL_RS14605 0.28 -0.1 2,731,016 - SGL_RS14605 0.37 +0.4
Or see this region's nucleotide sequence