Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS14580

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS14570 and SGL_RS14575 are separated by 228 nucleotidesSGL_RS14575 and SGL_RS14580 are separated by 222 nucleotidesSGL_RS14580 and SGL_RS14585 are separated by 55 nucleotidesSGL_RS14585 and SGL_RS14590 are separated by 56 nucleotides SGL_RS14570: SGL_RS14570 - rhodanese-like domain-containing protein, at 2,724,075 to 2,724,419 _RS14570 SGL_RS14575: SGL_RS14575 - RNA-binding protein, at 2,724,648 to 2,725,103 _RS14575 SGL_RS14580: SGL_RS14580 - ribose-5-phosphate isomerase RpiA, at 2,725,326 to 2,726,033 _RS14580 SGL_RS14585: SGL_RS14585 - TolB family protein, at 2,726,089 to 2,726,640 _RS14585 SGL_RS14590: SGL_RS14590 - hypothetical protein, at 2,726,697 to 2,727,059 _RS14590 Position (kb) 2725 2726 2727Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7at 2724.511 kb on + strandat 2724.771 kb on + strand, within SGL_RS14575at 2725.059 kb on + strandat 2725.129 kb on - strandat 2725.529 kb on - strand, within SGL_RS14580at 2725.652 kb on - strand, within SGL_RS14580at 2726.060 kb on - strandat 2726.241 kb on - strand, within SGL_RS14585at 2726.383 kb on - strand, within SGL_RS14585at 2726.837 kb on - strand, within SGL_RS14590at 2726.959 kb on + strand, within SGL_RS14590

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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2,724,511 + +6.9
2,724,771 + SGL_RS14575 0.27 +6.3
2,725,059 + +6.2
2,725,129 - +0.9
2,725,529 - SGL_RS14580 0.29 +1.0
2,725,652 - SGL_RS14580 0.46 -0.2
2,726,060 - -0.0
2,726,241 - SGL_RS14585 0.28 -2.7
2,726,383 - SGL_RS14585 0.53 -1.2
2,726,837 - SGL_RS14590 0.39 +1.2
2,726,959 + SGL_RS14590 0.72 +0.1

Or see this region's nucleotide sequence