Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS14255

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS14245 and SGL_RS14250 are separated by 442 nucleotidesSGL_RS14250 and SGL_RS14255 are separated by 27 nucleotidesSGL_RS14255 and SGL_RS19980 are separated by 201 nucleotides SGL_RS14245: SGL_RS14245 - TMEM165/GDT1 family protein, at 2,650,377 to 2,650,997 _RS14245 SGL_RS14250: SGL_RS14250 - DUF4253 domain-containing protein, at 2,651,440 to 2,651,838 _RS14250 SGL_RS14255: SGL_RS14255 - Holliday junction branch migration DNA helicase RuvB, at 2,651,866 to 2,652,951 _RS14255 SGL_RS19980: SGL_RS19980 - glycine oxidase ThiO, at 2,653,153 to 2,654,124 _RS19980 Position (kb) 2651 2652 2653Strain fitness (log2 ratio) -1 0 1 2 3at 2650.882 kb on - strand, within SGL_RS14245at 2651.317 kb on - strandat 2651.337 kb on - strandat 2651.455 kb on + strandat 2651.494 kb on + strand, within SGL_RS14250at 2651.504 kb on + strand, within SGL_RS14250at 2651.581 kb on - strand, within SGL_RS14250at 2651.779 kb on + strand, within SGL_RS14250at 2651.899 kb on - strandat 2653.126 kb on - strandat 2653.631 kb on - strand, within SGL_RS19980

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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2,650,882 - SGL_RS14245 0.81 +2.8
2,651,317 - -0.1
2,651,337 - -0.0
2,651,455 + +3.0
2,651,494 + SGL_RS14250 0.14 +1.0
2,651,504 + SGL_RS14250 0.16 -0.1
2,651,581 - SGL_RS14250 0.35 -0.4
2,651,779 + SGL_RS14250 0.85 -0.8
2,651,899 - -0.3
2,653,126 - +0.1
2,653,631 - SGL_RS19980 0.49 +0.5

Or see this region's nucleotide sequence