Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS13965 and SGL_RS19035 overlap by 50 nucleotides SGL_RS19035 and SGL_RS13970 are separated by 15 nucleotides SGL_RS13970 and SGL_RS13975 are separated by 220 nucleotides
SGL_RS13965: SGL_RS13965 - bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD, at 2,594,055 to 2,595,161
_RS13965
SGL_RS19035: SGL_RS19035 - DUF2256 domain-containing protein, at 2,595,112 to 2,595,264
_RS19035
SGL_RS13970: SGL_RS13970 - pitrilysin family protein, at 2,595,280 to 2,596,566
_RS13970
SGL_RS13975: SGL_RS13975 - Mrp/NBP35 family ATP-binding protein, at 2,596,787 to 2,597,848
_RS13975
Position (kb)
2595
2596
2597 Strain fitness (log2 ratio)
-1
0
1 at 2594.431 kb on + strand, within SGL_RS13965 at 2594.561 kb on - strand, within SGL_RS13965 at 2594.644 kb on - strand, within SGL_RS13965 at 2594.945 kb on + strand, within SGL_RS13965 at 2595.101 kb on + strand at 2595.121 kb on + strand at 2595.157 kb on - strand at 2595.299 kb on + strand at 2595.386 kb on + strand at 2595.391 kb on + strand at 2595.391 kb on + strand at 2595.394 kb on - strand at 2595.399 kb on - strand at 2595.426 kb on + strand, within SGL_RS13970 at 2595.619 kb on - strand, within SGL_RS13970 at 2595.625 kb on - strand, within SGL_RS13970 at 2595.630 kb on - strand, within SGL_RS13970 at 2595.773 kb on - strand, within SGL_RS13970 at 2595.863 kb on + strand, within SGL_RS13970 at 2595.863 kb on + strand, within SGL_RS13970 at 2595.863 kb on + strand, within SGL_RS13970 at 2595.933 kb on + strand, within SGL_RS13970 at 2596.060 kb on - strand, within SGL_RS13970 at 2596.248 kb on - strand, within SGL_RS13970 at 2596.281 kb on + strand, within SGL_RS13970 at 2596.294 kb on - strand, within SGL_RS13970 at 2596.481 kb on - strand at 2596.616 kb on + strand at 2596.618 kb on + strand at 2596.626 kb on - strand at 2596.631 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 2,594,431 + SGL_RS13965 0.34 +1.2 2,594,561 - SGL_RS13965 0.46 +1.2 2,594,644 - SGL_RS13965 0.53 +0.4 2,594,945 + SGL_RS13965 0.80 +0.2 2,595,101 + +0.4 2,595,121 + -0.6 2,595,157 - -0.5 2,595,299 + +0.9 2,595,386 + +0.7 2,595,391 + -0.1 2,595,391 + +0.5 2,595,394 - +0.1 2,595,399 - +0.0 2,595,426 + SGL_RS13970 0.11 +0.2 2,595,619 - SGL_RS13970 0.26 +1.3 2,595,625 - SGL_RS13970 0.27 +1.3 2,595,630 - SGL_RS13970 0.27 +0.1 2,595,773 - SGL_RS13970 0.38 +0.3 2,595,863 + SGL_RS13970 0.45 +0.0 2,595,863 + SGL_RS13970 0.45 +0.7 2,595,863 + SGL_RS13970 0.45 +0.4 2,595,933 + SGL_RS13970 0.51 +0.1 2,596,060 - SGL_RS13970 0.61 +0.7 2,596,248 - SGL_RS13970 0.75 +0.2 2,596,281 + SGL_RS13970 0.78 +0.9 2,596,294 - SGL_RS13970 0.79 -0.4 2,596,481 - +0.1 2,596,616 + -1.5 2,596,618 + -0.3 2,596,626 - +1.0 2,596,631 - +0.1
Or see this region's nucleotide sequence