Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS13665 and SGL_RS13670 are separated by 40 nucleotides SGL_RS13670 and SGL_RS13675 are separated by 57 nucleotides SGL_RS13675 and SGL_RS13680 are separated by 192 nucleotides
SGL_RS13665: SGL_RS13665 - DedA family protein, at 2,536,824 to 2,537,480
_RS13665
SGL_RS13670: SGL_RS13670 - thioredoxin, at 2,537,521 to 2,537,838
_RS13670
SGL_RS13675: SGL_RS13675 - 2OG-Fe(II) oxygenase, at 2,537,896 to 2,538,807
_RS13675
SGL_RS13680: SGL_RS13680 - chaperonin GroEL, at 2,539,000 to 2,540,658
_RS13680
Position (kb)
2537
2538
2539 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2536.950 kb on - strand, within SGL_RS13665 at 2536.950 kb on - strand, within SGL_RS13665 at 2537.075 kb on - strand, within SGL_RS13665 at 2537.091 kb on + strand, within SGL_RS13665 at 2537.099 kb on + strand, within SGL_RS13665 at 2537.099 kb on - strand, within SGL_RS13665 at 2537.118 kb on + strand, within SGL_RS13665 at 2537.420 kb on - strand at 2537.592 kb on + strand, within SGL_RS13670 at 2537.752 kb on - strand, within SGL_RS13670 at 2538.608 kb on + strand, within SGL_RS13675 at 2538.989 kb on + strand at 2539.003 kb on + strand at 2539.026 kb on - strand at 2539.535 kb on - strand, within SGL_RS13680 at 2539.727 kb on - strand, within SGL_RS13680 at 2539.735 kb on + strand, within SGL_RS13680 at 2539.746 kb on + strand, within SGL_RS13680 at 2539.754 kb on - strand, within SGL_RS13680 at 2539.754 kb on - strand, within SGL_RS13680 at 2539.754 kb on - strand, within SGL_RS13680 at 2539.771 kb on + strand, within SGL_RS13680 at 2539.805 kb on + strand, within SGL_RS13680
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 2,536,950 - SGL_RS13665 0.19 -2.0 2,536,950 - SGL_RS13665 0.19 -1.8 2,537,075 - SGL_RS13665 0.38 -0.7 2,537,091 + SGL_RS13665 0.41 -0.9 2,537,099 + SGL_RS13665 0.42 +0.3 2,537,099 - SGL_RS13665 0.42 -2.2 2,537,118 + SGL_RS13665 0.45 -1.4 2,537,420 - -2.2 2,537,592 + SGL_RS13670 0.22 -0.4 2,537,752 - SGL_RS13670 0.73 -1.2 2,538,608 + SGL_RS13675 0.78 -2.4 2,538,989 + +1.3 2,539,003 + -1.2 2,539,026 - -1.7 2,539,535 - SGL_RS13680 0.32 -0.5 2,539,727 - SGL_RS13680 0.44 -2.3 2,539,735 + SGL_RS13680 0.44 +0.2 2,539,746 + SGL_RS13680 0.45 -0.2 2,539,754 - SGL_RS13680 0.45 -3.4 2,539,754 - SGL_RS13680 0.45 -0.6 2,539,754 - SGL_RS13680 0.45 -1.6 2,539,771 + SGL_RS13680 0.46 -1.9 2,539,805 + SGL_RS13680 0.49 -2.0
Or see this region's nucleotide sequence