Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS13675

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS13665 and SGL_RS13670 are separated by 40 nucleotidesSGL_RS13670 and SGL_RS13675 are separated by 57 nucleotidesSGL_RS13675 and SGL_RS13680 are separated by 192 nucleotides SGL_RS13665: SGL_RS13665 - DedA family protein, at 2,536,824 to 2,537,480 _RS13665 SGL_RS13670: SGL_RS13670 - thioredoxin, at 2,537,521 to 2,537,838 _RS13670 SGL_RS13675: SGL_RS13675 - 2OG-Fe(II) oxygenase, at 2,537,896 to 2,538,807 _RS13675 SGL_RS13680: SGL_RS13680 - chaperonin GroEL, at 2,539,000 to 2,540,658 _RS13680 Position (kb) 2537 2538 2539Strain fitness (log2 ratio) -3 -2 -1 0 1at 2536.950 kb on - strand, within SGL_RS13665at 2536.950 kb on - strand, within SGL_RS13665at 2537.075 kb on - strand, within SGL_RS13665at 2537.091 kb on + strand, within SGL_RS13665at 2537.099 kb on + strand, within SGL_RS13665at 2537.099 kb on - strand, within SGL_RS13665at 2537.118 kb on + strand, within SGL_RS13665at 2537.420 kb on - strandat 2537.592 kb on + strand, within SGL_RS13670at 2537.752 kb on - strand, within SGL_RS13670at 2538.608 kb on + strand, within SGL_RS13675at 2538.989 kb on + strandat 2539.003 kb on + strandat 2539.026 kb on - strandat 2539.535 kb on - strand, within SGL_RS13680at 2539.727 kb on - strand, within SGL_RS13680at 2539.735 kb on + strand, within SGL_RS13680at 2539.746 kb on + strand, within SGL_RS13680at 2539.754 kb on - strand, within SGL_RS13680at 2539.754 kb on - strand, within SGL_RS13680at 2539.754 kb on - strand, within SGL_RS13680at 2539.771 kb on + strand, within SGL_RS13680at 2539.805 kb on + strand, within SGL_RS13680

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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2,536,950 - SGL_RS13665 0.19 -2.0
2,536,950 - SGL_RS13665 0.19 -1.8
2,537,075 - SGL_RS13665 0.38 -0.7
2,537,091 + SGL_RS13665 0.41 -0.9
2,537,099 + SGL_RS13665 0.42 +0.3
2,537,099 - SGL_RS13665 0.42 -2.2
2,537,118 + SGL_RS13665 0.45 -1.4
2,537,420 - -2.2
2,537,592 + SGL_RS13670 0.22 -0.4
2,537,752 - SGL_RS13670 0.73 -1.2
2,538,608 + SGL_RS13675 0.78 -2.4
2,538,989 + +1.3
2,539,003 + -1.2
2,539,026 - -1.7
2,539,535 - SGL_RS13680 0.32 -0.5
2,539,727 - SGL_RS13680 0.44 -2.3
2,539,735 + SGL_RS13680 0.44 +0.2
2,539,746 + SGL_RS13680 0.45 -0.2
2,539,754 - SGL_RS13680 0.45 -3.4
2,539,754 - SGL_RS13680 0.45 -0.6
2,539,754 - SGL_RS13680 0.45 -1.6
2,539,771 + SGL_RS13680 0.46 -1.9
2,539,805 + SGL_RS13680 0.49 -2.0

Or see this region's nucleotide sequence