Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS13235

Experiment: high light; bubbling

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS13230 and SGL_RS13235 are separated by 138 nucleotidesSGL_RS13235 and SGL_RS13240 are separated by 6 nucleotidesSGL_RS13240 and SGL_RS13245 are separated by 33 nucleotides SGL_RS13230: SGL_RS13230 - FAD-dependent oxidoreductase, at 2,434,808 to 2,436,304 _RS13230 SGL_RS13235: SGL_RS13235 - ABC transporter permease, at 2,436,443 to 2,437,228 _RS13235 SGL_RS13240: SGL_RS13240 - ribonuclease D, at 2,437,235 to 2,437,888 _RS13240 SGL_RS13245: SGL_RS13245 - DUF3747 domain-containing protein, at 2,437,922 to 2,438,779 _RS13245 Position (kb) 2436 2437 2438Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2435.655 kb on - strand, within SGL_RS13230at 2435.688 kb on - strand, within SGL_RS13230at 2435.688 kb on - strand, within SGL_RS13230at 2435.720 kb on + strand, within SGL_RS13230at 2435.770 kb on - strand, within SGL_RS13230at 2435.898 kb on - strand, within SGL_RS13230at 2435.923 kb on + strand, within SGL_RS13230at 2435.966 kb on + strand, within SGL_RS13230at 2436.331 kb on + strandat 2436.737 kb on - strand, within SGL_RS13235at 2436.798 kb on - strand, within SGL_RS13235at 2436.894 kb on + strand, within SGL_RS13235at 2436.902 kb on - strand, within SGL_RS13235at 2437.005 kb on - strand, within SGL_RS13235at 2437.184 kb on - strandat 2438.054 kb on - strand, within SGL_RS13245at 2438.062 kb on - strand, within SGL_RS13245at 2438.096 kb on + strand, within SGL_RS13245at 2438.159 kb on + strand, within SGL_RS13245

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
remove
2,435,655 - SGL_RS13230 0.57 -2.1
2,435,688 - SGL_RS13230 0.59 -0.7
2,435,688 - SGL_RS13230 0.59 -2.5
2,435,720 + SGL_RS13230 0.61 -1.3
2,435,770 - SGL_RS13230 0.64 -3.2
2,435,898 - SGL_RS13230 0.73 -1.3
2,435,923 + SGL_RS13230 0.74 -2.6
2,435,966 + SGL_RS13230 0.77 -1.5
2,436,331 + -1.8
2,436,737 - SGL_RS13235 0.37 -3.5
2,436,798 - SGL_RS13235 0.45 -3.7
2,436,894 + SGL_RS13235 0.57 -3.2
2,436,902 - SGL_RS13235 0.58 -2.1
2,437,005 - SGL_RS13235 0.72 +0.6
2,437,184 - -3.0
2,438,054 - SGL_RS13245 0.15 -4.4
2,438,062 - SGL_RS13245 0.16 +1.8
2,438,096 + SGL_RS13245 0.20 -0.9
2,438,159 + SGL_RS13245 0.28 -0.5

Or see this region's nucleotide sequence