Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS12555 and SGL_RS12560 overlap by 8 nucleotides SGL_RS12560 and SGL_RS12565 are separated by 47 nucleotides SGL_RS12565 and SGL_RS12570 are separated by 90 nucleotides
SGL_RS12555: SGL_RS12555 - alpha-mannosidase, at 2,274,868 to 2,277,996
_RS12555
SGL_RS12560: SGL_RS12560 - ABC transporter permease, at 2,277,989 to 2,278,873
_RS12560
SGL_RS12565: SGL_RS12565 - MEKHLA domain-containing protein, at 2,278,921 to 2,279,406
_RS12565
SGL_RS12570: SGL_RS12570 - pentapeptide repeat-containing protein, at 2,279,497 to 2,280,006
_RS12570
Position (kb)
2277
2278
2279 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2277.200 kb on + strand, within SGL_RS12555 at 2277.208 kb on - strand, within SGL_RS12555 at 2278.254 kb on + strand, within SGL_RS12560 at 2278.267 kb on + strand, within SGL_RS12560 at 2278.310 kb on - strand, within SGL_RS12560 at 2278.372 kb on + strand, within SGL_RS12560 at 2278.382 kb on - strand, within SGL_RS12560 at 2278.734 kb on + strand, within SGL_RS12560 at 2278.996 kb on - strand, within SGL_RS12565 at 2279.287 kb on + strand, within SGL_RS12565 at 2279.872 kb on + strand, within SGL_RS12570
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 2,277,200 + SGL_RS12555 0.75 +1.5 2,277,208 - SGL_RS12555 0.75 +2.7 2,278,254 + SGL_RS12560 0.30 -3.5 2,278,267 + SGL_RS12560 0.31 -2.5 2,278,310 - SGL_RS12560 0.36 -1.9 2,278,372 + SGL_RS12560 0.43 -0.1 2,278,382 - SGL_RS12560 0.44 -2.4 2,278,734 + SGL_RS12560 0.84 -1.1 2,278,996 - SGL_RS12565 0.15 -0.9 2,279,287 + SGL_RS12565 0.75 -0.5 2,279,872 + SGL_RS12570 0.74 -0.2
Or see this region's nucleotide sequence