Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS11990 and SGL_RS11995 are separated by 180 nucleotides SGL_RS11995 and SGL_RS12000 are separated by 132 nucleotides SGL_RS12000 and SGL_RS12005 are separated by 187 nucleotides SGL_RS12005 and SGL_RS12010 are separated by 333 nucleotides
SGL_RS11990: SGL_RS11990 - alanine--tRNA ligase, at 2,141,613 to 2,144,246
_RS11990
SGL_RS11995: SGL_RS11995 - hypothetical protein, at 2,144,427 to 2,144,846
_RS11995
SGL_RS12000: SGL_RS12000 - type II CAAX endopeptidase family protein, at 2,144,979 to 2,145,812
_RS12000
SGL_RS12005: SGL_RS12005 - AbrB family transcriptional regulator, at 2,146,000 to 2,146,467
_RS12005
SGL_RS12010: SGL_RS12010 - DUF3038 domain-containing protein, at 2,146,801 to 2,147,376
_RS12010
Position (kb)
2144
2145
2146 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4
5 at 2144.314 kb on + strand at 2144.314 kb on + strand at 2144.332 kb on - strand at 2144.359 kb on + strand at 2144.397 kb on - strand at 2144.433 kb on - strand at 2144.433 kb on - strand at 2144.543 kb on - strand, within SGL_RS11995 at 2144.579 kb on + strand, within SGL_RS11995 at 2144.687 kb on - strand, within SGL_RS11995 at 2145.015 kb on - strand at 2145.022 kb on - strand at 2145.147 kb on + strand, within SGL_RS12000 at 2145.174 kb on - strand, within SGL_RS12000 at 2145.210 kb on + strand, within SGL_RS12000 at 2145.218 kb on - strand, within SGL_RS12000 at 2145.218 kb on - strand, within SGL_RS12000 at 2145.264 kb on - strand, within SGL_RS12000 at 2145.336 kb on - strand, within SGL_RS12000 at 2145.388 kb on + strand, within SGL_RS12000 at 2145.465 kb on - strand, within SGL_RS12000 at 2145.522 kb on - strand, within SGL_RS12000 at 2145.706 kb on - strand, within SGL_RS12000 at 2146.683 kb on + strand at 2146.781 kb on + strand at 2146.797 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 2,144,314 + -0.3 2,144,314 + -0.1 2,144,332 - +1.3 2,144,359 + +0.2 2,144,397 - +0.3 2,144,433 - -0.2 2,144,433 - -1.0 2,144,543 - SGL_RS11995 0.28 -2.6 2,144,579 + SGL_RS11995 0.36 -2.2 2,144,687 - SGL_RS11995 0.62 -0.5 2,145,015 - -0.6 2,145,022 - -1.3 2,145,147 + SGL_RS12000 0.20 -2.5 2,145,174 - SGL_RS12000 0.23 -2.0 2,145,210 + SGL_RS12000 0.28 -4.4 2,145,218 - SGL_RS12000 0.29 -4.1 2,145,218 - SGL_RS12000 0.29 -3.9 2,145,264 - SGL_RS12000 0.34 -3.0 2,145,336 - SGL_RS12000 0.43 -2.1 2,145,388 + SGL_RS12000 0.49 -2.4 2,145,465 - SGL_RS12000 0.58 -3.3 2,145,522 - SGL_RS12000 0.65 -4.7 2,145,706 - SGL_RS12000 0.87 -2.6 2,146,683 + +4.9 2,146,781 + +1.7 2,146,797 - +1.2
Or see this region's nucleotide sequence