Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS12000

Experiment: high light; bubbling

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS11990 and SGL_RS11995 are separated by 180 nucleotidesSGL_RS11995 and SGL_RS12000 are separated by 132 nucleotidesSGL_RS12000 and SGL_RS12005 are separated by 187 nucleotidesSGL_RS12005 and SGL_RS12010 are separated by 333 nucleotides SGL_RS11990: SGL_RS11990 - alanine--tRNA ligase, at 2,141,613 to 2,144,246 _RS11990 SGL_RS11995: SGL_RS11995 - hypothetical protein, at 2,144,427 to 2,144,846 _RS11995 SGL_RS12000: SGL_RS12000 - type II CAAX endopeptidase family protein, at 2,144,979 to 2,145,812 _RS12000 SGL_RS12005: SGL_RS12005 - AbrB family transcriptional regulator, at 2,146,000 to 2,146,467 _RS12005 SGL_RS12010: SGL_RS12010 - DUF3038 domain-containing protein, at 2,146,801 to 2,147,376 _RS12010 Position (kb) 2144 2145 2146Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 2144.314 kb on + strandat 2144.314 kb on + strandat 2144.332 kb on - strandat 2144.359 kb on + strandat 2144.397 kb on - strandat 2144.433 kb on - strandat 2144.433 kb on - strandat 2144.543 kb on - strand, within SGL_RS11995at 2144.579 kb on + strand, within SGL_RS11995at 2144.687 kb on - strand, within SGL_RS11995at 2145.015 kb on - strandat 2145.022 kb on - strandat 2145.147 kb on + strand, within SGL_RS12000at 2145.174 kb on - strand, within SGL_RS12000at 2145.210 kb on + strand, within SGL_RS12000at 2145.218 kb on - strand, within SGL_RS12000at 2145.218 kb on - strand, within SGL_RS12000at 2145.264 kb on - strand, within SGL_RS12000at 2145.336 kb on - strand, within SGL_RS12000at 2145.388 kb on + strand, within SGL_RS12000at 2145.465 kb on - strand, within SGL_RS12000at 2145.522 kb on - strand, within SGL_RS12000at 2145.706 kb on - strand, within SGL_RS12000at 2146.683 kb on + strandat 2146.781 kb on + strandat 2146.797 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
remove
2,144,314 + -0.3
2,144,314 + -0.1
2,144,332 - +1.3
2,144,359 + +0.2
2,144,397 - +0.3
2,144,433 - -0.2
2,144,433 - -1.0
2,144,543 - SGL_RS11995 0.28 -2.6
2,144,579 + SGL_RS11995 0.36 -2.2
2,144,687 - SGL_RS11995 0.62 -0.5
2,145,015 - -0.6
2,145,022 - -1.3
2,145,147 + SGL_RS12000 0.20 -2.5
2,145,174 - SGL_RS12000 0.23 -2.0
2,145,210 + SGL_RS12000 0.28 -4.4
2,145,218 - SGL_RS12000 0.29 -4.1
2,145,218 - SGL_RS12000 0.29 -3.9
2,145,264 - SGL_RS12000 0.34 -3.0
2,145,336 - SGL_RS12000 0.43 -2.1
2,145,388 + SGL_RS12000 0.49 -2.4
2,145,465 - SGL_RS12000 0.58 -3.3
2,145,522 - SGL_RS12000 0.65 -4.7
2,145,706 - SGL_RS12000 0.87 -2.6
2,146,683 + +4.9
2,146,781 + +1.7
2,146,797 - +1.2

Or see this region's nucleotide sequence