Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS11845

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS11840 and SGL_RS11845 are separated by 18 nucleotidesSGL_RS11845 and SGL_RS11850 are separated by 6 nucleotidesSGL_RS11850 and SGL_RS11855 are separated by 117 nucleotidesSGL_RS11855 and SGL_RS11860 are separated by 96 nucleotides SGL_RS11840: SGL_RS11840 - phosphodiester glycosidase family protein, at 2,105,837 to 2,107,645 _RS11840 SGL_RS11845: SGL_RS11845 - primosomal protein N', at 2,107,664 to 2,110,159 _RS11845 SGL_RS11850: SGL_RS11850 - hypothetical protein, at 2,110,166 to 2,110,579 _RS11850 SGL_RS11855: SGL_RS11855 - YtxH domain-containing protein, at 2,110,697 to 2,111,044 _RS11855 SGL_RS11860: SGL_RS11860 - EAL domain-containing protein, at 2,111,141 to 2,115,877 _RS11860 Position (kb) 2107 2108 2109 2110 2111Strain fitness (log2 ratio) -1 0 1 2 3at 2106.782 kb on - strand, within SGL_RS11840at 2107.597 kb on + strandat 2110.200 kb on + strandat 2110.208 kb on - strand, within SGL_RS11850at 2110.208 kb on - strand, within SGL_RS11850at 2110.208 kb on - strand, within SGL_RS11850at 2110.220 kb on - strand, within SGL_RS11850at 2110.223 kb on - strand, within SGL_RS11850at 2110.368 kb on - strand, within SGL_RS11850at 2110.533 kb on - strand, within SGL_RS11850at 2110.533 kb on - strand, within SGL_RS11850at 2110.583 kb on - strandat 2110.674 kb on - strandat 2110.818 kb on - strand, within SGL_RS11855at 2110.883 kb on - strand, within SGL_RS11855at 2111.127 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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2,106,782 - SGL_RS11840 0.52 +0.6
2,107,597 + +0.4
2,110,200 + +2.9
2,110,208 - SGL_RS11850 0.10 -0.2
2,110,208 - SGL_RS11850 0.10 +0.5
2,110,208 - SGL_RS11850 0.10 +0.3
2,110,220 - SGL_RS11850 0.13 +0.7
2,110,223 - SGL_RS11850 0.14 -0.2
2,110,368 - SGL_RS11850 0.49 +0.4
2,110,533 - SGL_RS11850 0.89 +0.2
2,110,533 - SGL_RS11850 0.89 +2.5
2,110,583 - -1.6
2,110,674 - +1.5
2,110,818 - SGL_RS11855 0.35 +0.1
2,110,883 - SGL_RS11855 0.53 +0.6
2,111,127 - -0.5

Or see this region's nucleotide sequence