Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS11840 and SGL_RS11845 are separated by 18 nucleotides SGL_RS11845 and SGL_RS11850 are separated by 6 nucleotides SGL_RS11850 and SGL_RS11855 are separated by 117 nucleotides SGL_RS11855 and SGL_RS11860 are separated by 96 nucleotides
SGL_RS11840: SGL_RS11840 - phosphodiester glycosidase family protein, at 2,105,837 to 2,107,645
_RS11840
SGL_RS11845: SGL_RS11845 - primosomal protein N', at 2,107,664 to 2,110,159
_RS11845
SGL_RS11850: SGL_RS11850 - hypothetical protein, at 2,110,166 to 2,110,579
_RS11850
SGL_RS11855: SGL_RS11855 - YtxH domain-containing protein, at 2,110,697 to 2,111,044
_RS11855
SGL_RS11860: SGL_RS11860 - EAL domain-containing protein, at 2,111,141 to 2,115,877
_RS11860
Position (kb)
2107
2108
2109
2110
2111 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2106.782 kb on - strand, within SGL_RS11840 at 2107.597 kb on + strand at 2110.200 kb on + strand at 2110.208 kb on - strand, within SGL_RS11850 at 2110.208 kb on - strand, within SGL_RS11850 at 2110.208 kb on - strand, within SGL_RS11850 at 2110.220 kb on - strand, within SGL_RS11850 at 2110.223 kb on - strand, within SGL_RS11850 at 2110.368 kb on - strand, within SGL_RS11850 at 2110.533 kb on - strand, within SGL_RS11850 at 2110.533 kb on - strand, within SGL_RS11850 at 2110.583 kb on - strand at 2110.674 kb on - strand at 2110.818 kb on - strand, within SGL_RS11855 at 2110.883 kb on - strand, within SGL_RS11855 at 2111.127 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 2,106,782 - SGL_RS11840 0.52 +0.6 2,107,597 + +0.4 2,110,200 + +2.9 2,110,208 - SGL_RS11850 0.10 -0.2 2,110,208 - SGL_RS11850 0.10 +0.5 2,110,208 - SGL_RS11850 0.10 +0.3 2,110,220 - SGL_RS11850 0.13 +0.7 2,110,223 - SGL_RS11850 0.14 -0.2 2,110,368 - SGL_RS11850 0.49 +0.4 2,110,533 - SGL_RS11850 0.89 +0.2 2,110,533 - SGL_RS11850 0.89 +2.5 2,110,583 - -1.6 2,110,674 - +1.5 2,110,818 - SGL_RS11855 0.35 +0.1 2,110,883 - SGL_RS11855 0.53 +0.6 2,111,127 - -0.5
Or see this region's nucleotide sequence