Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS11805

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS11800 and SGL_RS11805 are separated by 68 nucleotidesSGL_RS11805 and SGL_RS11810 are separated by 318 nucleotides SGL_RS11800: SGL_RS11800 - 2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, at 2,096,618 to 2,097,574 _RS11800 SGL_RS11805: SGL_RS11805 - DNA polymerase III subunit delta', at 2,097,643 to 2,098,602 _RS11805 SGL_RS11810: SGL_RS11810 - urea ABC transporter substrate-binding protein, at 2,098,921 to 2,100,261 _RS11810 Position (kb) 2097 2098 2099Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7 8at 2096.646 kb on + strandat 2096.646 kb on + strandat 2096.646 kb on + strandat 2096.732 kb on - strand, within SGL_RS11800at 2096.749 kb on + strand, within SGL_RS11800at 2096.837 kb on + strand, within SGL_RS11800at 2096.838 kb on + strand, within SGL_RS11800at 2096.892 kb on - strand, within SGL_RS11800at 2097.029 kb on + strand, within SGL_RS11800at 2097.049 kb on - strand, within SGL_RS11800at 2097.119 kb on - strand, within SGL_RS11800at 2097.333 kb on - strand, within SGL_RS11800at 2097.367 kb on - strand, within SGL_RS11800at 2097.403 kb on + strand, within SGL_RS11800at 2097.437 kb on + strand, within SGL_RS11800at 2097.636 kb on - strandat 2097.640 kb on + strandat 2098.659 kb on + strandat 2098.699 kb on - strandat 2098.805 kb on - strandat 2098.925 kb on - strandat 2098.989 kb on + strandat 2099.010 kb on + strandat 2099.049 kb on + strandat 2099.202 kb on - strand, within SGL_RS11810at 2099.284 kb on + strand, within SGL_RS11810at 2099.368 kb on - strand, within SGL_RS11810at 2099.383 kb on - strand, within SGL_RS11810at 2099.400 kb on - strand, within SGL_RS11810at 2099.468 kb on - strand, within SGL_RS11810at 2099.528 kb on + strand, within SGL_RS11810at 2099.537 kb on - strand, within SGL_RS11810

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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2,096,646 + +8.0
2,096,646 + +8.1
2,096,646 + +8.2
2,096,732 - SGL_RS11800 0.12 +7.7
2,096,749 + SGL_RS11800 0.14 +7.6
2,096,837 + SGL_RS11800 0.23 +7.8
2,096,838 + SGL_RS11800 0.23 +7.7
2,096,892 - SGL_RS11800 0.29 +7.6
2,097,029 + SGL_RS11800 0.43 +7.8
2,097,049 - SGL_RS11800 0.45 +7.8
2,097,119 - SGL_RS11800 0.52 +7.8
2,097,333 - SGL_RS11800 0.75 +7.6
2,097,367 - SGL_RS11800 0.78 +7.6
2,097,403 + SGL_RS11800 0.82 +7.7
2,097,437 + SGL_RS11800 0.86 +7.8
2,097,636 - -0.5
2,097,640 + -0.3
2,098,659 + +0.1
2,098,699 - +0.5
2,098,805 - -0.0
2,098,925 - +1.2
2,098,989 + +0.5
2,099,010 + -1.6
2,099,049 + -2.0
2,099,202 - SGL_RS11810 0.21 -1.4
2,099,284 + SGL_RS11810 0.27 -2.7
2,099,368 - SGL_RS11810 0.33 -1.1
2,099,383 - SGL_RS11810 0.34 -1.2
2,099,400 - SGL_RS11810 0.36 -0.0
2,099,468 - SGL_RS11810 0.41 -0.1
2,099,528 + SGL_RS11810 0.45 -2.3
2,099,537 - SGL_RS11810 0.46 -0.9

Or see this region's nucleotide sequence