Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS11690

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS11685 and SGL_RS11690 are separated by 25 nucleotidesSGL_RS11690 and SGL_RS11695 are separated by 764 nucleotides SGL_RS11685: SGL_RS11685 - diflavin flavoprotein, at 2,076,547 to 2,078,340 _RS11685 SGL_RS11690: SGL_RS11690 - DNA repair protein RecN, at 2,078,366 to 2,080,120 _RS11690 SGL_RS11695: SGL_RS11695 - hypothetical protein, at 2,080,885 to 2,082,720 _RS11695 Position (kb) 2078 2079 2080 2081Strain fitness (log2 ratio) -2 -1 0 1 2at 2077.404 kb on - strand, within SGL_RS11685at 2077.452 kb on + strand, within SGL_RS11685at 2077.502 kb on + strand, within SGL_RS11685at 2077.602 kb on - strand, within SGL_RS11685at 2077.639 kb on - strand, within SGL_RS11685at 2077.662 kb on - strand, within SGL_RS11685at 2077.727 kb on + strand, within SGL_RS11685at 2077.747 kb on + strand, within SGL_RS11685at 2077.779 kb on + strand, within SGL_RS11685at 2077.787 kb on + strand, within SGL_RS11685at 2077.794 kb on - strand, within SGL_RS11685at 2077.820 kb on - strand, within SGL_RS11685at 2077.839 kb on - strand, within SGL_RS11685at 2077.949 kb on - strand, within SGL_RS11685at 2078.009 kb on + strand, within SGL_RS11685at 2078.044 kb on + strand, within SGL_RS11685at 2078.044 kb on + strand, within SGL_RS11685at 2078.124 kb on + strand, within SGL_RS11685at 2078.224 kb on + strandat 2078.245 kb on + strandat 2078.363 kb on + strandat 2078.494 kb on + strandat 2078.508 kb on - strandat 2078.517 kb on - strandat 2078.549 kb on - strand, within SGL_RS11690at 2078.598 kb on + strand, within SGL_RS11690at 2078.604 kb on + strand, within SGL_RS11690at 2078.647 kb on - strand, within SGL_RS11690at 2078.777 kb on + strand, within SGL_RS11690at 2078.844 kb on + strand, within SGL_RS11690at 2079.047 kb on - strand, within SGL_RS11690at 2079.064 kb on - strand, within SGL_RS11690at 2079.239 kb on + strand, within SGL_RS11690at 2079.303 kb on + strand, within SGL_RS11690at 2079.510 kb on - strand, within SGL_RS11690at 2080.054 kb on - strandat 2080.290 kb on - strandat 2080.434 kb on + strandat 2080.456 kb on + strandat 2080.652 kb on + strandat 2080.737 kb on + strandat 2080.921 kb on + strandat 2081.065 kb on + strandat 2081.085 kb on - strand, within SGL_RS11695

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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2,077,404 - SGL_RS11685 0.48 +0.3
2,077,452 + SGL_RS11685 0.50 +1.4
2,077,502 + SGL_RS11685 0.53 +0.4
2,077,602 - SGL_RS11685 0.59 -1.2
2,077,639 - SGL_RS11685 0.61 -0.3
2,077,662 - SGL_RS11685 0.62 +0.1
2,077,727 + SGL_RS11685 0.66 -0.9
2,077,747 + SGL_RS11685 0.67 +0.9
2,077,779 + SGL_RS11685 0.69 -0.4
2,077,787 + SGL_RS11685 0.69 +0.8
2,077,794 - SGL_RS11685 0.70 +1.1
2,077,820 - SGL_RS11685 0.71 +0.2
2,077,839 - SGL_RS11685 0.72 -1.3
2,077,949 - SGL_RS11685 0.78 -0.6
2,078,009 + SGL_RS11685 0.81 +0.6
2,078,044 + SGL_RS11685 0.83 +1.0
2,078,044 + SGL_RS11685 0.83 +0.5
2,078,124 + SGL_RS11685 0.88 -0.2
2,078,224 + +1.3
2,078,245 + +0.9
2,078,363 + -0.7
2,078,494 + +0.4
2,078,508 - -0.4
2,078,517 - -0.7
2,078,549 - SGL_RS11690 0.10 +1.4
2,078,598 + SGL_RS11690 0.13 -0.7
2,078,604 + SGL_RS11690 0.14 -0.9
2,078,647 - SGL_RS11690 0.16 -1.1
2,078,777 + SGL_RS11690 0.23 +0.3
2,078,844 + SGL_RS11690 0.27 -1.5
2,079,047 - SGL_RS11690 0.39 -0.5
2,079,064 - SGL_RS11690 0.40 +1.1
2,079,239 + SGL_RS11690 0.50 -0.3
2,079,303 + SGL_RS11690 0.53 +1.9
2,079,510 - SGL_RS11690 0.65 -1.8
2,080,054 - +0.9
2,080,290 - -0.0
2,080,434 + +0.9
2,080,456 + +1.1
2,080,652 + +0.5
2,080,737 + +0.1
2,080,921 + -1.2
2,081,065 + -0.8
2,081,085 - SGL_RS11695 0.11 -0.1

Or see this region's nucleotide sequence