Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS11625

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS11615 and SGL_RS11620 overlap by 15 nucleotidesSGL_RS11620 and SGL_RS11625 are separated by 192 nucleotidesSGL_RS11625 and SGL_RS11630 are separated by 522 nucleotides SGL_RS11615: SGL_RS11615 - ATP-dependent chaperone ClpB, at 2,062,905 to 2,065,523 _RS11615 SGL_RS11620: SGL_RS11620 - hypothetical protein, at 2,065,509 to 2,065,808 _RS11620 SGL_RS11625: SGL_RS11625 - phosphoribulokinase, at 2,066,001 to 2,066,999 _RS11625 SGL_RS11630: SGL_RS11630 - phycobilisome linker polypeptide, at 2,067,522 to 2,068,763 _RS11630 Position (kb) 2066 2067Strain fitness (log2 ratio) -1 0 1at 2065.014 kb on + strand, within SGL_RS11615at 2065.169 kb on - strand, within SGL_RS11615at 2065.321 kb on - strandat 2065.582 kb on - strand, within SGL_RS11620at 2065.582 kb on - strand, within SGL_RS11620at 2065.615 kb on - strand, within SGL_RS11620at 2065.939 kb on - strandat 2065.998 kb on + strandat 2065.998 kb on + strandat 2067.210 kb on + strandat 2067.275 kb on - strandat 2067.497 kb on - strandat 2067.497 kb on - strandat 2067.794 kb on - strand, within SGL_RS11630

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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2,065,014 + SGL_RS11615 0.81 +0.4
2,065,169 - SGL_RS11615 0.86 +0.6
2,065,321 - +1.1
2,065,582 - SGL_RS11620 0.24 -0.2
2,065,582 - SGL_RS11620 0.24 +0.4
2,065,615 - SGL_RS11620 0.35 -1.6
2,065,939 - -0.6
2,065,998 + +0.9
2,065,998 + +0.7
2,067,210 + +0.6
2,067,275 - -0.6
2,067,497 - +0.6
2,067,497 - -0.9
2,067,794 - SGL_RS11630 0.22 +0.1

Or see this region's nucleotide sequence