Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS11610

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS11605 and SGL_RS11610 are separated by 125 nucleotidesSGL_RS11610 and SGL_RS11615 are separated by 283 nucleotides SGL_RS11605: SGL_RS11605 - glycosyltransferase, at 2,057,469 to 2,060,975 _RS11605 SGL_RS11610: SGL_RS11610 - class I SAM-dependent methyltransferase, at 2,061,101 to 2,062,621 _RS11610 SGL_RS11615: SGL_RS11615 - ATP-dependent chaperone ClpB, at 2,062,905 to 2,065,523 _RS11615 Position (kb) 2061 2062 2063Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2060.401 kb on - strand, within SGL_RS11605at 2060.903 kb on + strandat 2061.490 kb on + strand, within SGL_RS11610at 2061.505 kb on + strand, within SGL_RS11610at 2061.778 kb on - strand, within SGL_RS11610at 2062.093 kb on - strand, within SGL_RS11610at 2062.553 kb on - strandat 2062.802 kb on - strandat 2063.073 kb on - strandat 2063.099 kb on + strandat 2063.100 kb on + strandat 2063.141 kb on + strandat 2063.347 kb on + strand, within SGL_RS11615at 2063.355 kb on - strand, within SGL_RS11615at 2063.515 kb on - strand, within SGL_RS11615

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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2,060,401 - SGL_RS11605 0.84 -2.0
2,060,903 + -4.2
2,061,490 + SGL_RS11610 0.26 -4.4
2,061,505 + SGL_RS11610 0.27 -2.6
2,061,778 - SGL_RS11610 0.45 -2.0
2,062,093 - SGL_RS11610 0.65 -1.5
2,062,553 - -0.9
2,062,802 - -0.6
2,063,073 - +1.5
2,063,099 + +0.6
2,063,100 + -0.9
2,063,141 + -0.5
2,063,347 + SGL_RS11615 0.17 +0.2
2,063,355 - SGL_RS11615 0.17 -0.1
2,063,515 - SGL_RS11615 0.23 +1.8

Or see this region's nucleotide sequence