Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS11395

Experiment: high light; bubbling

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS11390 and SGL_RS11395 overlap by 1 nucleotidesSGL_RS11395 and SGL_RS11400 are separated by 62 nucleotidesSGL_RS11400 and SGL_RS11405 are separated by 15 nucleotides SGL_RS11390: SGL_RS11390 - branched-chain amino acid ABC transporter permease, at 2,017,104 to 2,017,964 _RS11390 SGL_RS11395: SGL_RS11395 - TlyA family RNA methyltransferase, at 2,017,964 to 2,018,788 _RS11395 SGL_RS11400: SGL_RS11400 - hypothetical protein, at 2,018,851 to 2,019,237 _RS11400 SGL_RS11405: SGL_RS11405 - tetratricopeptide repeat protein, at 2,019,253 to 2,020,344 _RS11405 Position (kb) 2017 2018 2019Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2016.983 kb on + strandat 2017.057 kb on - strandat 2017.124 kb on - strandat 2017.176 kb on + strandat 2017.210 kb on - strand, within SGL_RS11390at 2017.241 kb on + strand, within SGL_RS11390at 2017.265 kb on - strand, within SGL_RS11390at 2017.293 kb on + strand, within SGL_RS11390at 2017.293 kb on + strand, within SGL_RS11390at 2017.298 kb on + strand, within SGL_RS11390at 2017.301 kb on - strand, within SGL_RS11390at 2017.354 kb on - strand, within SGL_RS11390at 2017.565 kb on + strand, within SGL_RS11390at 2017.667 kb on + strand, within SGL_RS11390at 2017.692 kb on + strand, within SGL_RS11390at 2017.701 kb on + strand, within SGL_RS11390at 2017.946 kb on + strandat 2017.946 kb on + strandat 2018.012 kb on + strandat 2018.030 kb on + strandat 2018.189 kb on - strand, within SGL_RS11395at 2018.310 kb on - strand, within SGL_RS11395at 2018.402 kb on + strand, within SGL_RS11395at 2018.408 kb on - strand, within SGL_RS11395at 2018.415 kb on - strand, within SGL_RS11395at 2018.564 kb on + strand, within SGL_RS11395at 2018.597 kb on + strand, within SGL_RS11395at 2018.610 kb on + strand, within SGL_RS11395at 2018.643 kb on - strand, within SGL_RS11395at 2018.866 kb on - strandat 2019.031 kb on + strand, within SGL_RS11400

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
remove
2,016,983 + -0.9
2,017,057 - +1.1
2,017,124 - -2.2
2,017,176 + -1.3
2,017,210 - SGL_RS11390 0.12 -0.0
2,017,241 + SGL_RS11390 0.16 -0.1
2,017,265 - SGL_RS11390 0.19 -1.8
2,017,293 + SGL_RS11390 0.22 -0.1
2,017,293 + SGL_RS11390 0.22 -1.0
2,017,298 + SGL_RS11390 0.23 -2.0
2,017,301 - SGL_RS11390 0.23 +0.2
2,017,354 - SGL_RS11390 0.29 -0.9
2,017,565 + SGL_RS11390 0.54 -0.3
2,017,667 + SGL_RS11390 0.65 -1.2
2,017,692 + SGL_RS11390 0.68 -0.3
2,017,701 + SGL_RS11390 0.69 -2.5
2,017,946 + -0.2
2,017,946 + -0.6
2,018,012 + +0.1
2,018,030 + -4.0
2,018,189 - SGL_RS11395 0.27 +0.6
2,018,310 - SGL_RS11395 0.42 -1.1
2,018,402 + SGL_RS11395 0.53 -1.7
2,018,408 - SGL_RS11395 0.54 -1.6
2,018,415 - SGL_RS11395 0.55 -3.5
2,018,564 + SGL_RS11395 0.73 -2.6
2,018,597 + SGL_RS11395 0.77 -3.1
2,018,610 + SGL_RS11395 0.78 -3.9
2,018,643 - SGL_RS11395 0.82 -4.2
2,018,866 - -0.1
2,019,031 + SGL_RS11400 0.47 +0.0

Or see this region's nucleotide sequence