Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS11100

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS11095 and SGL_RS11100 overlap by 20 nucleotidesSGL_RS11100 and SGL_RS11105 are separated by 105 nucleotidesSGL_RS11105 and SGL_RS11110 are separated by 149 nucleotides SGL_RS11095: SGL_RS11095 - glycerol kinase GlpK, at 1,952,323 to 1,953,810 _RS11095 SGL_RS11100: SGL_RS11100 - RNA methyltransferase, at 1,953,791 to 1,954,615 _RS11100 SGL_RS11105: SGL_RS11105 - DUF760 domain-containing protein, at 1,954,721 to 1,955,071 _RS11105 SGL_RS11110: SGL_RS11110 - hydrogenase maturation nickel metallochaperone HypA, at 1,955,221 to 1,955,562 _RS11110 Position (kb) 1953 1954 1955Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1952.844 kb on - strand, within SGL_RS11095at 1952.861 kb on - strand, within SGL_RS11095at 1952.880 kb on - strand, within SGL_RS11095at 1952.899 kb on - strand, within SGL_RS11095at 1953.158 kb on + strand, within SGL_RS11095at 1953.453 kb on + strand, within SGL_RS11095at 1953.486 kb on - strand, within SGL_RS11095at 1953.521 kb on + strand, within SGL_RS11095at 1953.544 kb on - strand, within SGL_RS11095at 1953.657 kb on + strand, within SGL_RS11095at 1953.779 kb on + strandat 1953.871 kb on - strandat 1953.933 kb on + strand, within SGL_RS11100at 1953.939 kb on - strand, within SGL_RS11100at 1953.941 kb on - strand, within SGL_RS11100at 1953.950 kb on + strand, within SGL_RS11100at 1953.951 kb on + strand, within SGL_RS11100at 1953.958 kb on - strand, within SGL_RS11100at 1954.035 kb on + strand, within SGL_RS11100at 1954.036 kb on - strand, within SGL_RS11100at 1954.036 kb on - strand, within SGL_RS11100at 1954.155 kb on + strand, within SGL_RS11100at 1954.160 kb on + strand, within SGL_RS11100at 1954.277 kb on - strand, within SGL_RS11100at 1954.610 kb on + strandat 1954.748 kb on + strandat 1954.768 kb on - strand, within SGL_RS11105at 1954.919 kb on + strand, within SGL_RS11105at 1954.966 kb on - strand, within SGL_RS11105at 1954.976 kb on - strand, within SGL_RS11105at 1955.018 kb on - strand, within SGL_RS11105at 1955.095 kb on - strandat 1955.122 kb on + strandat 1955.130 kb on - strandat 1955.130 kb on - strandat 1955.213 kb on - strandat 1955.320 kb on + strand, within SGL_RS11110at 1955.327 kb on + strand, within SGL_RS11110at 1955.369 kb on - strand, within SGL_RS11110at 1955.515 kb on + strand, within SGL_RS11110

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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1,952,844 - SGL_RS11095 0.35 -0.1
1,952,861 - SGL_RS11095 0.36 +0.1
1,952,880 - SGL_RS11095 0.37 +0.3
1,952,899 - SGL_RS11095 0.39 -0.9
1,953,158 + SGL_RS11095 0.56 -1.0
1,953,453 + SGL_RS11095 0.76 -1.4
1,953,486 - SGL_RS11095 0.78 -0.7
1,953,521 + SGL_RS11095 0.81 -0.4
1,953,544 - SGL_RS11095 0.82 +0.2
1,953,657 + SGL_RS11095 0.90 -1.2
1,953,779 + -2.9
1,953,871 - +0.7
1,953,933 + SGL_RS11100 0.17 +1.2
1,953,939 - SGL_RS11100 0.18 +2.1
1,953,941 - SGL_RS11100 0.18 +1.1
1,953,950 + SGL_RS11100 0.19 +1.8
1,953,951 + SGL_RS11100 0.19 +2.1
1,953,958 - SGL_RS11100 0.20 +0.7
1,954,035 + SGL_RS11100 0.30 +2.2
1,954,036 - SGL_RS11100 0.30 +0.9
1,954,036 - SGL_RS11100 0.30 +2.0
1,954,155 + SGL_RS11100 0.44 +2.2
1,954,160 + SGL_RS11100 0.45 +0.3
1,954,277 - SGL_RS11100 0.59 +0.8
1,954,610 + +0.4
1,954,748 + -1.8
1,954,768 - SGL_RS11105 0.13 -0.3
1,954,919 + SGL_RS11105 0.56 -1.9
1,954,966 - SGL_RS11105 0.70 -0.2
1,954,976 - SGL_RS11105 0.73 +0.6
1,955,018 - SGL_RS11105 0.85 -0.9
1,955,095 - -0.2
1,955,122 + +0.9
1,955,130 - +0.1
1,955,130 - +0.2
1,955,213 - -1.3
1,955,320 + SGL_RS11110 0.29 -0.9
1,955,327 + SGL_RS11110 0.31 -0.8
1,955,369 - SGL_RS11110 0.43 -0.1
1,955,515 + SGL_RS11110 0.86 +0.5

Or see this region's nucleotide sequence