Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS10580 and SGL_RS10585 are separated by 564 nucleotides SGL_RS10585 and SGL_RS19605 are separated by 25 nucleotides SGL_RS19605 and SGL_RS10595 are separated by 126 nucleotides SGL_RS10595 and SGL_RS10600 are separated by 75 nucleotides
SGL_RS10580: SGL_RS10580 - bifunctional sterol desaturase/short chain dehydrogenase, at 1,839,259 to 1,840,491
_RS10580
SGL_RS10585: SGL_RS10585 - MFS transporter, at 1,841,056 to 1,842,690
_RS10585
SGL_RS19605: SGL_RS19605 - hypothetical protein, at 1,842,716 to 1,842,856
_RS19605
SGL_RS10595: SGL_RS10595 - hypothetical protein, at 1,842,983 to 1,843,534
_RS10595
SGL_RS10600: SGL_RS10600 - YybS family protein, at 1,843,610 to 1,844,437
_RS10600
Position (kb) 1841
1842
1843 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 1840.468 kb on - strand at 1840.779 kb on + strand at 1841.114 kb on + strand at 1841.198 kb on + strand at 1841.271 kb on + strand, within SGL_RS10585 at 1841.361 kb on - strand, within SGL_RS10585 at 1841.363 kb on + strand, within SGL_RS10585 at 1841.463 kb on - strand, within SGL_RS10585 at 1841.479 kb on + strand, within SGL_RS10585 at 1841.497 kb on - strand, within SGL_RS10585 at 1841.497 kb on - strand, within SGL_RS10585 at 1841.640 kb on + strand, within SGL_RS10585 at 1841.833 kb on + strand, within SGL_RS10585 at 1842.009 kb on + strand, within SGL_RS10585 at 1842.065 kb on + strand, within SGL_RS10585 at 1842.065 kb on + strand, within SGL_RS10585 at 1842.070 kb on + strand, within SGL_RS10585 at 1842.090 kb on - strand, within SGL_RS10585 at 1842.126 kb on + strand, within SGL_RS10585 at 1842.160 kb on + strand, within SGL_RS10585 at 1842.161 kb on + strand, within SGL_RS10585 at 1842.175 kb on + strand, within SGL_RS10585 at 1842.248 kb on - strand, within SGL_RS10585 at 1842.557 kb on - strand at 1842.783 kb on - strand, within SGL_RS19605 at 1842.783 kb on - strand, within SGL_RS19605 at 1842.889 kb on + strand at 1842.897 kb on - strand at 1842.932 kb on + strand at 1842.993 kb on + strand at 1842.993 kb on + strand at 1843.001 kb on - strand at 1843.190 kb on - strand, within SGL_RS10595
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 1,840,468 - +0.9 1,840,779 + -1.7 1,841,114 + -0.8 1,841,198 + -2.4 1,841,271 + SGL_RS10585 0.13 -1.6 1,841,361 - SGL_RS10585 0.19 -2.5 1,841,363 + SGL_RS10585 0.19 -3.1 1,841,463 - SGL_RS10585 0.25 -4.1 1,841,479 + SGL_RS10585 0.26 -1.8 1,841,497 - SGL_RS10585 0.27 -2.5 1,841,497 - SGL_RS10585 0.27 -1.3 1,841,640 + SGL_RS10585 0.36 +0.5 1,841,833 + SGL_RS10585 0.48 -3.6 1,842,009 + SGL_RS10585 0.58 -2.2 1,842,065 + SGL_RS10585 0.62 -2.9 1,842,065 + SGL_RS10585 0.62 -3.2 1,842,070 + SGL_RS10585 0.62 -2.6 1,842,090 - SGL_RS10585 0.63 -2.5 1,842,126 + SGL_RS10585 0.65 -3.9 1,842,160 + SGL_RS10585 0.68 -5.6 1,842,161 + SGL_RS10585 0.68 -3.3 1,842,175 + SGL_RS10585 0.68 -3.2 1,842,248 - SGL_RS10585 0.73 -3.6 1,842,557 - -2.2 1,842,783 - SGL_RS19605 0.48 -0.9 1,842,783 - SGL_RS19605 0.48 -2.5 1,842,889 + +0.3 1,842,897 - -2.5 1,842,932 + -1.6 1,842,993 + +1.1 1,842,993 + -1.1 1,843,001 - +0.2 1,843,190 - SGL_RS10595 0.38 -0.3
Or see this region's nucleotide sequence