Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS10435

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS10430 and SGL_RS10435 are separated by 483 nucleotidesSGL_RS10435 and SGL_RS10440 are separated by 152 nucleotides SGL_RS10430: SGL_RS10430 - S1 RNA-binding domain-containing protein, at 1,815,454 to 1,816,371 _RS10430 SGL_RS10435: SGL_RS10435 - DNA primase, at 1,816,855 to 1,818,762 _RS10435 SGL_RS10440: SGL_RS10440 - photosystem II q(b) protein, at 1,818,915 to 1,819,997 _RS10440 Position (kb) 1816 1817 1818 1819Strain fitness (log2 ratio) -1 0 1 2at 1816.105 kb on + strand, within SGL_RS10430at 1816.149 kb on + strand, within SGL_RS10430at 1816.152 kb on + strand, within SGL_RS10430at 1816.159 kb on + strand, within SGL_RS10430at 1816.408 kb on + strandat 1818.802 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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1,816,105 + SGL_RS10430 0.71 +0.9
1,816,149 + SGL_RS10430 0.76 +1.0
1,816,152 + SGL_RS10430 0.76 +2.1
1,816,159 + SGL_RS10430 0.77 +0.8
1,816,408 + -0.4
1,818,802 + +0.9

Or see this region's nucleotide sequence