Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS10265

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS10260 and SGL_RS10265 overlap by 70 nucleotidesSGL_RS10265 and SGL_RS10270 are separated by 143 nucleotidesSGL_RS10270 and SGL_RS10275 are separated by 191 nucleotides SGL_RS10260: SGL_RS10260 - CHAT domain-containing protein, at 1,773,352 to 1,776,150 _RS10260 SGL_RS10265: SGL_RS10265 - DUF928 domain-containing protein, at 1,776,081 to 1,776,839 _RS10265 SGL_RS10270: SGL_RS10270 - cobaltochelatase, at 1,776,983 to 1,777,537 _RS10270 SGL_RS10275: SGL_RS10275 - ATP-binding protein, at 1,777,729 to 1,779,981 _RS10275 Position (kb) 1776 1777Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1775.133 kb on + strand, within SGL_RS10260at 1775.133 kb on + strand, within SGL_RS10260at 1775.133 kb on + strand, within SGL_RS10260at 1775.141 kb on - strand, within SGL_RS10260at 1775.141 kb on - strand, within SGL_RS10260at 1775.256 kb on + strand, within SGL_RS10260at 1775.499 kb on + strand, within SGL_RS10260at 1775.499 kb on + strand, within SGL_RS10260at 1775.507 kb on - strand, within SGL_RS10260at 1775.507 kb on - strand, within SGL_RS10260at 1775.507 kb on - strand, within SGL_RS10260at 1775.517 kb on - strand, within SGL_RS10260at 1775.526 kb on + strand, within SGL_RS10260at 1775.623 kb on + strand, within SGL_RS10260at 1775.673 kb on + strand, within SGL_RS10260at 1775.694 kb on + strand, within SGL_RS10260at 1775.891 kb on - strandat 1776.139 kb on + strandat 1776.173 kb on + strand, within SGL_RS10265at 1776.264 kb on + strand, within SGL_RS10265at 1776.309 kb on + strand, within SGL_RS10265at 1776.334 kb on + strand, within SGL_RS10265at 1776.393 kb on + strand, within SGL_RS10265at 1776.417 kb on + strand, within SGL_RS10265at 1776.418 kb on - strand, within SGL_RS10265at 1776.425 kb on - strand, within SGL_RS10265at 1776.425 kb on - strand, within SGL_RS10265at 1776.607 kb on + strand, within SGL_RS10265at 1776.615 kb on - strand, within SGL_RS10265at 1776.615 kb on - strand, within SGL_RS10265at 1776.637 kb on - strand, within SGL_RS10265at 1776.677 kb on - strand, within SGL_RS10265at 1776.795 kb on + strandat 1776.795 kb on + strandat 1776.797 kb on - strandat 1776.800 kb on + strandat 1776.803 kb on - strandat 1776.803 kb on - strandat 1776.803 kb on - strandat 1776.879 kb on + strandat 1776.951 kb on + strandat 1776.959 kb on + strandat 1777.579 kb on + strandat 1777.701 kb on - strandat 1777.771 kb on + strandat 1777.779 kb on - strandat 1777.807 kb on + strandat 1777.808 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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1,775,133 + SGL_RS10260 0.64 -1.6
1,775,133 + SGL_RS10260 0.64 +0.1
1,775,133 + SGL_RS10260 0.64 -0.2
1,775,141 - SGL_RS10260 0.64 -1.0
1,775,141 - SGL_RS10260 0.64 +1.1
1,775,256 + SGL_RS10260 0.68 -0.4
1,775,499 + SGL_RS10260 0.77 +0.2
1,775,499 + SGL_RS10260 0.77 -0.7
1,775,507 - SGL_RS10260 0.77 -2.6
1,775,507 - SGL_RS10260 0.77 +0.1
1,775,507 - SGL_RS10260 0.77 +0.3
1,775,517 - SGL_RS10260 0.77 -0.2
1,775,526 + SGL_RS10260 0.78 -0.0
1,775,623 + SGL_RS10260 0.81 -0.3
1,775,673 + SGL_RS10260 0.83 -0.4
1,775,694 + SGL_RS10260 0.84 +0.4
1,775,891 - -0.2
1,776,139 + -4.1
1,776,173 + SGL_RS10265 0.12 -2.8
1,776,264 + SGL_RS10265 0.24 -5.0
1,776,309 + SGL_RS10265 0.30 -0.7
1,776,334 + SGL_RS10265 0.33 -4.5
1,776,393 + SGL_RS10265 0.41 -3.1
1,776,417 + SGL_RS10265 0.44 -4.4
1,776,418 - SGL_RS10265 0.44 -2.6
1,776,425 - SGL_RS10265 0.45 -5.5
1,776,425 - SGL_RS10265 0.45 -0.1
1,776,607 + SGL_RS10265 0.69 -4.1
1,776,615 - SGL_RS10265 0.70 -2.6
1,776,615 - SGL_RS10265 0.70 -5.1
1,776,637 - SGL_RS10265 0.73 -0.7
1,776,677 - SGL_RS10265 0.79 -3.7
1,776,795 + -4.3
1,776,795 + -2.9
1,776,797 - -4.8
1,776,800 + -5.0
1,776,803 - -4.6
1,776,803 - -2.9
1,776,803 - -3.6
1,776,879 + +0.6
1,776,951 + +0.8
1,776,959 + -1.6
1,777,579 + -1.0
1,777,701 - +1.6
1,777,771 + -0.3
1,777,779 - -0.3
1,777,807 + -2.2
1,777,808 + +1.2

Or see this region's nucleotide sequence