Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS10260 and SGL_RS10265 overlap by 70 nucleotides SGL_RS10265 and SGL_RS10270 are separated by 143 nucleotides SGL_RS10270 and SGL_RS10275 are separated by 191 nucleotides
SGL_RS10260: SGL_RS10260 - CHAT domain-containing protein, at 1,773,352 to 1,776,150
_RS10260
SGL_RS10265: SGL_RS10265 - DUF928 domain-containing protein, at 1,776,081 to 1,776,839
_RS10265
SGL_RS10270: SGL_RS10270 - cobaltochelatase, at 1,776,983 to 1,777,537
_RS10270
SGL_RS10275: SGL_RS10275 - ATP-binding protein, at 1,777,729 to 1,779,981
_RS10275
Position (kb)
1776
1777 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 1775.133 kb on + strand, within SGL_RS10260 at 1775.133 kb on + strand, within SGL_RS10260 at 1775.133 kb on + strand, within SGL_RS10260 at 1775.141 kb on - strand, within SGL_RS10260 at 1775.141 kb on - strand, within SGL_RS10260 at 1775.256 kb on + strand, within SGL_RS10260 at 1775.499 kb on + strand, within SGL_RS10260 at 1775.499 kb on + strand, within SGL_RS10260 at 1775.507 kb on - strand, within SGL_RS10260 at 1775.507 kb on - strand, within SGL_RS10260 at 1775.507 kb on - strand, within SGL_RS10260 at 1775.517 kb on - strand, within SGL_RS10260 at 1775.526 kb on + strand, within SGL_RS10260 at 1775.623 kb on + strand, within SGL_RS10260 at 1775.673 kb on + strand, within SGL_RS10260 at 1775.694 kb on + strand, within SGL_RS10260 at 1775.891 kb on - strand at 1776.139 kb on + strand at 1776.173 kb on + strand, within SGL_RS10265 at 1776.264 kb on + strand, within SGL_RS10265 at 1776.309 kb on + strand, within SGL_RS10265 at 1776.334 kb on + strand, within SGL_RS10265 at 1776.393 kb on + strand, within SGL_RS10265 at 1776.417 kb on + strand, within SGL_RS10265 at 1776.418 kb on - strand, within SGL_RS10265 at 1776.425 kb on - strand, within SGL_RS10265 at 1776.425 kb on - strand, within SGL_RS10265 at 1776.607 kb on + strand, within SGL_RS10265 at 1776.615 kb on - strand, within SGL_RS10265 at 1776.615 kb on - strand, within SGL_RS10265 at 1776.637 kb on - strand, within SGL_RS10265 at 1776.677 kb on - strand, within SGL_RS10265 at 1776.795 kb on + strand at 1776.795 kb on + strand at 1776.797 kb on - strand at 1776.800 kb on + strand at 1776.803 kb on - strand at 1776.803 kb on - strand at 1776.803 kb on - strand at 1776.879 kb on + strand at 1776.951 kb on + strand at 1776.959 kb on + strand at 1777.579 kb on + strand at 1777.701 kb on - strand at 1777.771 kb on + strand at 1777.779 kb on - strand at 1777.807 kb on + strand at 1777.808 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 1,775,133 + SGL_RS10260 0.64 -1.6 1,775,133 + SGL_RS10260 0.64 +0.1 1,775,133 + SGL_RS10260 0.64 -0.2 1,775,141 - SGL_RS10260 0.64 -1.0 1,775,141 - SGL_RS10260 0.64 +1.1 1,775,256 + SGL_RS10260 0.68 -0.4 1,775,499 + SGL_RS10260 0.77 +0.2 1,775,499 + SGL_RS10260 0.77 -0.7 1,775,507 - SGL_RS10260 0.77 -2.6 1,775,507 - SGL_RS10260 0.77 +0.1 1,775,507 - SGL_RS10260 0.77 +0.3 1,775,517 - SGL_RS10260 0.77 -0.2 1,775,526 + SGL_RS10260 0.78 -0.0 1,775,623 + SGL_RS10260 0.81 -0.3 1,775,673 + SGL_RS10260 0.83 -0.4 1,775,694 + SGL_RS10260 0.84 +0.4 1,775,891 - -0.2 1,776,139 + -4.1 1,776,173 + SGL_RS10265 0.12 -2.8 1,776,264 + SGL_RS10265 0.24 -5.0 1,776,309 + SGL_RS10265 0.30 -0.7 1,776,334 + SGL_RS10265 0.33 -4.5 1,776,393 + SGL_RS10265 0.41 -3.1 1,776,417 + SGL_RS10265 0.44 -4.4 1,776,418 - SGL_RS10265 0.44 -2.6 1,776,425 - SGL_RS10265 0.45 -5.5 1,776,425 - SGL_RS10265 0.45 -0.1 1,776,607 + SGL_RS10265 0.69 -4.1 1,776,615 - SGL_RS10265 0.70 -2.6 1,776,615 - SGL_RS10265 0.70 -5.1 1,776,637 - SGL_RS10265 0.73 -0.7 1,776,677 - SGL_RS10265 0.79 -3.7 1,776,795 + -4.3 1,776,795 + -2.9 1,776,797 - -4.8 1,776,800 + -5.0 1,776,803 - -4.6 1,776,803 - -2.9 1,776,803 - -3.6 1,776,879 + +0.6 1,776,951 + +0.8 1,776,959 + -1.6 1,777,579 + -1.0 1,777,701 - +1.6 1,777,771 + -0.3 1,777,779 - -0.3 1,777,807 + -2.2 1,777,808 + +1.2
Or see this region's nucleotide sequence