Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS09950

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS09940 and SGL_RS09945 are separated by 420 nucleotidesSGL_RS09945 and SGL_RS09950 are separated by 154 nucleotidesSGL_RS09950 and SGL_RS09955 are separated by 152 nucleotides SGL_RS09940: SGL_RS09940 - IS630 transposase-related protein, at 1,710,814 to 1,711,659 _RS09940 SGL_RS09945: SGL_RS09945 - MoaD/ThiS family protein, at 1,712,080 to 1,712,409 _RS09945 SGL_RS09950: SGL_RS09950 - ribulose-phosphate 3-epimerase, at 1,712,564 to 1,713,256 _RS09950 SGL_RS09955: SGL_RS09955 - cation-transporting P-type ATPase, at 1,713,409 to 1,716,270 _RS09955 Position (kb) 1712 1713 1714Strain fitness (log2 ratio) -1 0 1at 1711.572 kb on + strand, within SGL_RS09940at 1711.793 kb on + strandat 1711.799 kb on + strandat 1711.873 kb on + strandat 1711.892 kb on - strandat 1711.978 kb on + strandat 1713.411 kb on + strandat 1713.419 kb on - strandat 1713.494 kb on + strandat 1713.502 kb on - strandat 1713.502 kb on - strandat 1713.511 kb on + strandat 1713.512 kb on - strandat 1713.556 kb on - strandat 1713.688 kb on - strandat 1713.688 kb on - strandat 1713.799 kb on + strand, within SGL_RS09955at 1713.918 kb on - strand, within SGL_RS09955at 1714.053 kb on - strand, within SGL_RS09955at 1714.126 kb on + strand, within SGL_RS09955at 1714.134 kb on - strand, within SGL_RS09955at 1714.167 kb on - strand, within SGL_RS09955at 1714.182 kb on + strand, within SGL_RS09955at 1714.182 kb on + strand, within SGL_RS09955

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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1,711,572 + SGL_RS09940 0.90 -0.9
1,711,793 + +1.2
1,711,799 + -0.4
1,711,873 + +0.0
1,711,892 - +0.6
1,711,978 + -1.6
1,713,411 + -0.4
1,713,419 - -0.4
1,713,494 + +0.8
1,713,502 - -1.1
1,713,502 - -0.3
1,713,511 + +0.6
1,713,512 - -0.4
1,713,556 - +0.7
1,713,688 - -1.4
1,713,688 - -0.5
1,713,799 + SGL_RS09955 0.14 +0.0
1,713,918 - SGL_RS09955 0.18 -0.3
1,714,053 - SGL_RS09955 0.23 -0.0
1,714,126 + SGL_RS09955 0.25 -1.5
1,714,134 - SGL_RS09955 0.25 +1.6
1,714,167 - SGL_RS09955 0.26 -0.5
1,714,182 + SGL_RS09955 0.27 -1.1
1,714,182 + SGL_RS09955 0.27 +0.9

Or see this region's nucleotide sequence