Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS09800 and SGL_RS09805 are separated by 107 nucleotides SGL_RS09805 and SGL_RS09810 are separated by 107 nucleotides SGL_RS09810 and SGL_RS09815 are separated by 159 nucleotides
SGL_RS09800: SGL_RS09800 - FAD-binding oxidoreductase, at 1,685,899 to 1,687,218
_RS09800
SGL_RS09805: SGL_RS09805 - photosystem I reaction center subunit IX, at 1,687,326 to 1,687,448
_RS09805
SGL_RS09810: SGL_RS09810 - photosystem I reaction center subunit III, at 1,687,556 to 1,688,053
_RS09810
SGL_RS09815: SGL_RS09815 - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD, at 1,688,213 to 1,689,259
_RS09815
Position (kb) 1687
1688 Strain fitness (log2 ratio) -1
0
1
2
3
4
5
6
7 at 1686.406 kb on + strand, within SGL_RS09800 at 1686.421 kb on + strand, within SGL_RS09800 at 1686.429 kb on - strand, within SGL_RS09800 at 1686.544 kb on - strand, within SGL_RS09800 at 1686.862 kb on + strand, within SGL_RS09800 at 1687.504 kb on - strand at 1687.831 kb on + strand, within SGL_RS09810 at 1688.024 kb on + strand at 1688.025 kb on - strand at 1688.370 kb on - strand, within SGL_RS09815 at 1688.393 kb on - strand, within SGL_RS09815 at 1688.419 kb on - strand, within SGL_RS09815 at 1688.419 kb on - strand, within SGL_RS09815
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 1,686,406 + SGL_RS09800 0.38 +2.5 1,686,421 + SGL_RS09800 0.40 +1.4 1,686,429 - SGL_RS09800 0.40 +0.3 1,686,544 - SGL_RS09800 0.49 +3.1 1,686,862 + SGL_RS09800 0.73 +2.3 1,687,504 - +3.4 1,687,831 + SGL_RS09810 0.55 -0.2 1,688,024 + +1.9 1,688,025 - +0.5 1,688,370 - SGL_RS09815 0.15 +7.0 1,688,393 - SGL_RS09815 0.17 +6.4 1,688,419 - SGL_RS09815 0.20 +7.1 1,688,419 - SGL_RS09815 0.20 +7.4
Or see this region's nucleotide sequence