Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS09570

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS09560 and SGL_RS09565 are separated by 21 nucleotidesSGL_RS09565 and SGL_RS09570 are separated by 119 nucleotidesSGL_RS09570 and SGL_RS09575 are separated by 696 nucleotides SGL_RS09560: SGL_RS09560 - SDR family oxidoreductase, at 1,636,705 to 1,637,454 _RS09560 SGL_RS09565: SGL_RS09565 - DUF115 domain-containing protein, at 1,637,476 to 1,638,270 _RS09565 SGL_RS09570: SGL_RS09570 - glycosyltransferase family 2 protein, at 1,638,390 to 1,639,247 _RS09570 SGL_RS09575: SGL_RS09575 - hypothetical protein, at 1,639,944 to 1,640,519 _RS09575 Position (kb) 1638 1639 1640Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1637.391 kb on + strandat 1637.399 kb on - strandat 1637.439 kb on + strandat 1637.452 kb on - strandat 1637.492 kb on - strandat 1637.499 kb on - strandat 1637.519 kb on - strandat 1637.552 kb on + strandat 1637.579 kb on - strand, within SGL_RS09565at 1637.597 kb on + strand, within SGL_RS09565at 1638.133 kb on - strand, within SGL_RS09565at 1638.502 kb on - strand, within SGL_RS09570at 1638.520 kb on + strand, within SGL_RS09570at 1638.639 kb on + strand, within SGL_RS09570at 1639.191 kb on + strandat 1639.374 kb on - strandat 1639.537 kb on - strandat 1639.539 kb on + strandat 1639.799 kb on - strandat 1639.909 kb on + strandat 1639.914 kb on + strandat 1639.914 kb on + strandat 1639.962 kb on - strandat 1639.984 kb on + strandat 1640.002 kb on - strand, within SGL_RS09575at 1640.130 kb on + strand, within SGL_RS09575at 1640.149 kb on - strand, within SGL_RS09575at 1640.165 kb on + strand, within SGL_RS09575

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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1,637,391 + -1.1
1,637,399 - -1.4
1,637,439 + -2.7
1,637,452 - -1.6
1,637,492 - -3.7
1,637,499 - -2.6
1,637,519 - -1.8
1,637,552 + -3.3
1,637,579 - SGL_RS09565 0.13 -1.8
1,637,597 + SGL_RS09565 0.15 -0.9
1,638,133 - SGL_RS09565 0.83 -2.7
1,638,502 - SGL_RS09570 0.13 -2.2
1,638,520 + SGL_RS09570 0.15 -3.8
1,638,639 + SGL_RS09570 0.29 +0.4
1,639,191 + -1.8
1,639,374 - +0.8
1,639,537 - -0.6
1,639,539 + -0.1
1,639,799 - +0.9
1,639,909 + -0.3
1,639,914 + +0.2
1,639,914 + -0.9
1,639,962 - +0.2
1,639,984 + +0.2
1,640,002 - SGL_RS09575 0.10 +0.0
1,640,130 + SGL_RS09575 0.32 -0.2
1,640,149 - SGL_RS09575 0.36 +0.0
1,640,165 + SGL_RS09575 0.38 +0.4

Or see this region's nucleotide sequence