Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS09565

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS09555 and SGL_RS09560 are separated by 2 nucleotidesSGL_RS09560 and SGL_RS09565 are separated by 21 nucleotidesSGL_RS09565 and SGL_RS09570 are separated by 119 nucleotides SGL_RS09555: SGL_RS09555 - phosphoglycerate dehydrogenase, at 1,635,746 to 1,636,702 _RS09555 SGL_RS09560: SGL_RS09560 - SDR family oxidoreductase, at 1,636,705 to 1,637,454 _RS09560 SGL_RS09565: SGL_RS09565 - DUF115 domain-containing protein, at 1,637,476 to 1,638,270 _RS09565 SGL_RS09570: SGL_RS09570 - glycosyltransferase family 2 protein, at 1,638,390 to 1,639,247 _RS09570 Position (kb) 1637 1638 1639Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1636.489 kb on + strand, within SGL_RS09555at 1636.535 kb on - strand, within SGL_RS09555at 1636.558 kb on - strand, within SGL_RS09555at 1636.568 kb on + strand, within SGL_RS09555at 1636.576 kb on - strand, within SGL_RS09555at 1636.864 kb on + strand, within SGL_RS09560at 1636.864 kb on + strand, within SGL_RS09560at 1636.872 kb on - strand, within SGL_RS09560at 1636.990 kb on - strand, within SGL_RS09560at 1637.051 kb on - strand, within SGL_RS09560at 1637.133 kb on + strand, within SGL_RS09560at 1637.133 kb on + strand, within SGL_RS09560at 1637.160 kb on - strand, within SGL_RS09560at 1637.165 kb on - strand, within SGL_RS09560at 1637.221 kb on + strand, within SGL_RS09560at 1637.307 kb on - strand, within SGL_RS09560at 1637.391 kb on + strandat 1637.399 kb on - strandat 1637.439 kb on + strandat 1637.452 kb on - strandat 1637.492 kb on - strandat 1637.499 kb on - strandat 1637.519 kb on - strandat 1637.552 kb on + strandat 1637.579 kb on - strand, within SGL_RS09565at 1637.597 kb on + strand, within SGL_RS09565at 1638.133 kb on - strand, within SGL_RS09565at 1638.502 kb on - strand, within SGL_RS09570at 1638.520 kb on + strand, within SGL_RS09570at 1638.639 kb on + strand, within SGL_RS09570at 1639.191 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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1,636,489 + SGL_RS09555 0.78 -2.0
1,636,535 - SGL_RS09555 0.82 -3.6
1,636,558 - SGL_RS09555 0.85 -3.8
1,636,568 + SGL_RS09555 0.86 -2.3
1,636,576 - SGL_RS09555 0.87 -1.7
1,636,864 + SGL_RS09560 0.21 -0.1
1,636,864 + SGL_RS09560 0.21 -3.9
1,636,872 - SGL_RS09560 0.22 -3.3
1,636,990 - SGL_RS09560 0.38 -4.9
1,637,051 - SGL_RS09560 0.46 -3.9
1,637,133 + SGL_RS09560 0.57 -3.2
1,637,133 + SGL_RS09560 0.57 -0.9
1,637,160 - SGL_RS09560 0.61 -4.1
1,637,165 - SGL_RS09560 0.61 -3.6
1,637,221 + SGL_RS09560 0.69 -1.1
1,637,307 - SGL_RS09560 0.80 -4.2
1,637,391 + -1.1
1,637,399 - -1.4
1,637,439 + -2.7
1,637,452 - -1.6
1,637,492 - -3.7
1,637,499 - -2.6
1,637,519 - -1.8
1,637,552 + -3.3
1,637,579 - SGL_RS09565 0.13 -1.8
1,637,597 + SGL_RS09565 0.15 -0.9
1,638,133 - SGL_RS09565 0.83 -2.7
1,638,502 - SGL_RS09570 0.13 -2.2
1,638,520 + SGL_RS09570 0.15 -3.8
1,638,639 + SGL_RS09570 0.29 +0.4
1,639,191 + -1.8

Or see this region's nucleotide sequence