Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS08915

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS08905 and SGL_RS08910 are separated by 78 nucleotidesSGL_RS08910 and SGL_RS08915 are separated by 95 nucleotidesSGL_RS08915 and SGL_RS08920 are separated by 221 nucleotides SGL_RS08905: SGL_RS08905 - cob(I)yrinic acid a,c-diamide adenosyltransferase, at 1,507,481 to 1,508,092 _RS08905 SGL_RS08910: SGL_RS08910 - hypothetical protein, at 1,508,171 to 1,508,386 _RS08910 SGL_RS08915: SGL_RS08915 - SpoIID/LytB domain-containing protein, at 1,508,482 to 1,509,768 _RS08915 SGL_RS08920: SGL_RS08920 - NAD(P)H-quinone oxidoreductase subunit H, at 1,509,990 to 1,511,174 _RS08920 Position (kb) 1508 1509 1510Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1507.718 kb on + strand, within SGL_RS08905at 1507.726 kb on - strand, within SGL_RS08905at 1508.129 kb on - strandat 1508.129 kb on - strandat 1508.195 kb on + strand, within SGL_RS08910at 1508.644 kb on - strand, within SGL_RS08915at 1508.713 kb on + strand, within SGL_RS08915at 1508.713 kb on + strand, within SGL_RS08915at 1508.721 kb on - strand, within SGL_RS08915at 1508.754 kb on + strand, within SGL_RS08915at 1508.805 kb on + strand, within SGL_RS08915at 1508.906 kb on - strand, within SGL_RS08915at 1508.986 kb on - strand, within SGL_RS08915at 1509.053 kb on + strand, within SGL_RS08915at 1509.098 kb on - strand, within SGL_RS08915at 1509.106 kb on + strand, within SGL_RS08915at 1509.106 kb on + strand, within SGL_RS08915at 1509.106 kb on + strand, within SGL_RS08915at 1509.113 kb on - strand, within SGL_RS08915at 1509.141 kb on - strand, within SGL_RS08915at 1509.217 kb on - strand, within SGL_RS08915at 1509.217 kb on - strand, within SGL_RS08915at 1509.262 kb on + strand, within SGL_RS08915at 1509.318 kb on + strand, within SGL_RS08915at 1509.378 kb on + strand, within SGL_RS08915at 1509.599 kb on + strand, within SGL_RS08915at 1509.625 kb on - strand, within SGL_RS08915at 1509.809 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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1,507,718 + SGL_RS08905 0.39 +0.9
1,507,726 - SGL_RS08905 0.40 +0.3
1,508,129 - +0.2
1,508,129 - +0.7
1,508,195 + SGL_RS08910 0.11 +1.3
1,508,644 - SGL_RS08915 0.13 -3.9
1,508,713 + SGL_RS08915 0.18 -1.2
1,508,713 + SGL_RS08915 0.18 -3.9
1,508,721 - SGL_RS08915 0.19 -3.8
1,508,754 + SGL_RS08915 0.21 -4.6
1,508,805 + SGL_RS08915 0.25 -2.4
1,508,906 - SGL_RS08915 0.33 -4.4
1,508,986 - SGL_RS08915 0.39 -1.8
1,509,053 + SGL_RS08915 0.44 -2.7
1,509,098 - SGL_RS08915 0.48 -4.5
1,509,106 + SGL_RS08915 0.48 -3.4
1,509,106 + SGL_RS08915 0.48 -3.0
1,509,106 + SGL_RS08915 0.48 -1.6
1,509,113 - SGL_RS08915 0.49 -2.6
1,509,141 - SGL_RS08915 0.51 -3.3
1,509,217 - SGL_RS08915 0.57 -0.1
1,509,217 - SGL_RS08915 0.57 -2.5
1,509,262 + SGL_RS08915 0.61 -4.5
1,509,318 + SGL_RS08915 0.65 -1.6
1,509,378 + SGL_RS08915 0.70 -3.2
1,509,599 + SGL_RS08915 0.87 -4.9
1,509,625 - SGL_RS08915 0.89 -4.5
1,509,809 - -3.6

Or see this region's nucleotide sequence