Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS08200 and SGL_RS08205 overlap by 17 nucleotides SGL_RS08205 and SGL_RS08210 are separated by 337 nucleotides
SGL_RS08200: SGL_RS08200 - photosystem II reaction center protein CP43, at 1,347,474 to 1,348,856
_RS08200
SGL_RS08205: SGL_RS08205 - photosystem II D2 protein (photosystem q(a) protein), at 1,348,840 to 1,349,898
_RS08205
SGL_RS08210: SGL_RS08210 - chromosomal replication initiator protein DnaA, at 1,350,236 to 1,351,579
_RS08210
Position (kb)
1348
1349
1350 Strain fitness (log2 ratio)
-1
0
1
2
3
4
5
6
7
8
9 at 1350.034 kb on - strand at 1350.036 kb on - strand at 1350.069 kb on + strand at 1350.133 kb on - strand at 1350.232 kb on + strand at 1350.280 kb on + strand at 1350.298 kb on - strand at 1350.298 kb on - strand at 1350.344 kb on + strand at 1350.398 kb on + strand, within SGL_RS08210 at 1350.456 kb on - strand, within SGL_RS08210 at 1350.497 kb on - strand, within SGL_RS08210 at 1350.591 kb on + strand, within SGL_RS08210 at 1350.599 kb on - strand, within SGL_RS08210 at 1350.632 kb on + strand, within SGL_RS08210 at 1350.650 kb on - strand, within SGL_RS08210 at 1350.666 kb on + strand, within SGL_RS08210 at 1350.678 kb on + strand, within SGL_RS08210 at 1350.686 kb on - strand, within SGL_RS08210 at 1350.686 kb on - strand, within SGL_RS08210 at 1350.686 kb on - strand, within SGL_RS08210 at 1350.686 kb on - strand, within SGL_RS08210 at 1350.854 kb on + strand, within SGL_RS08210 at 1350.862 kb on - strand, within SGL_RS08210
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 1,350,034 - +9.1 1,350,036 - +5.9 1,350,069 + +5.8 1,350,133 - +9.2 1,350,232 + +0.3 1,350,280 + +2.9 1,350,298 - +3.5 1,350,298 - +2.6 1,350,344 + +3.2 1,350,398 + SGL_RS08210 0.12 +3.3 1,350,456 - SGL_RS08210 0.16 +2.4 1,350,497 - SGL_RS08210 0.19 +2.3 1,350,591 + SGL_RS08210 0.26 +2.6 1,350,599 - SGL_RS08210 0.27 +3.5 1,350,632 + SGL_RS08210 0.29 +2.8 1,350,650 - SGL_RS08210 0.31 +2.2 1,350,666 + SGL_RS08210 0.32 +3.3 1,350,678 + SGL_RS08210 0.33 +3.7 1,350,686 - SGL_RS08210 0.33 +3.0 1,350,686 - SGL_RS08210 0.33 +2.8 1,350,686 - SGL_RS08210 0.33 +3.2 1,350,686 - SGL_RS08210 0.33 +2.9 1,350,854 + SGL_RS08210 0.46 +3.6 1,350,862 - SGL_RS08210 0.47 +2.0
Or see this region's nucleotide sequence