Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS08205

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS08200 and SGL_RS08205 overlap by 17 nucleotidesSGL_RS08205 and SGL_RS08210 are separated by 337 nucleotides SGL_RS08200: SGL_RS08200 - photosystem II reaction center protein CP43, at 1,347,474 to 1,348,856 _RS08200 SGL_RS08205: SGL_RS08205 - photosystem II D2 protein (photosystem q(a) protein), at 1,348,840 to 1,349,898 _RS08205 SGL_RS08210: SGL_RS08210 - chromosomal replication initiator protein DnaA, at 1,350,236 to 1,351,579 _RS08210 Position (kb) 1348 1349 1350Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6 7 8 9at 1350.034 kb on - strandat 1350.036 kb on - strandat 1350.069 kb on + strandat 1350.133 kb on - strandat 1350.232 kb on + strandat 1350.280 kb on + strandat 1350.298 kb on - strandat 1350.298 kb on - strandat 1350.344 kb on + strandat 1350.398 kb on + strand, within SGL_RS08210at 1350.456 kb on - strand, within SGL_RS08210at 1350.497 kb on - strand, within SGL_RS08210at 1350.591 kb on + strand, within SGL_RS08210at 1350.599 kb on - strand, within SGL_RS08210at 1350.632 kb on + strand, within SGL_RS08210at 1350.650 kb on - strand, within SGL_RS08210at 1350.666 kb on + strand, within SGL_RS08210at 1350.678 kb on + strand, within SGL_RS08210at 1350.686 kb on - strand, within SGL_RS08210at 1350.686 kb on - strand, within SGL_RS08210at 1350.686 kb on - strand, within SGL_RS08210at 1350.686 kb on - strand, within SGL_RS08210at 1350.854 kb on + strand, within SGL_RS08210at 1350.862 kb on - strand, within SGL_RS08210

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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1,350,034 - +9.1
1,350,036 - +5.9
1,350,069 + +5.8
1,350,133 - +9.2
1,350,232 + +0.3
1,350,280 + +2.9
1,350,298 - +3.5
1,350,298 - +2.6
1,350,344 + +3.2
1,350,398 + SGL_RS08210 0.12 +3.3
1,350,456 - SGL_RS08210 0.16 +2.4
1,350,497 - SGL_RS08210 0.19 +2.3
1,350,591 + SGL_RS08210 0.26 +2.6
1,350,599 - SGL_RS08210 0.27 +3.5
1,350,632 + SGL_RS08210 0.29 +2.8
1,350,650 - SGL_RS08210 0.31 +2.2
1,350,666 + SGL_RS08210 0.32 +3.3
1,350,678 + SGL_RS08210 0.33 +3.7
1,350,686 - SGL_RS08210 0.33 +3.0
1,350,686 - SGL_RS08210 0.33 +2.8
1,350,686 - SGL_RS08210 0.33 +3.2
1,350,686 - SGL_RS08210 0.33 +2.9
1,350,854 + SGL_RS08210 0.46 +3.6
1,350,862 - SGL_RS08210 0.47 +2.0

Or see this region's nucleotide sequence