Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS07840 and SGL_RS07845 are separated by 125 nucleotides SGL_RS07845 and SGL_RS07850 are separated by 49 nucleotides SGL_RS07850 and SGL_RS07855 are separated by 251 nucleotides
SGL_RS07840: SGL_RS07840 - SDR family NAD(P)-dependent oxidoreductase, at 1,276,236 to 1,276,982
_RS07840
SGL_RS07845: SGL_RS07845 - DUF427 domain-containing protein, at 1,277,108 to 1,277,392
_RS07845
SGL_RS07850: SGL_RS07850 - response regulator transcription factor, at 1,277,442 to 1,278,074
_RS07850
SGL_RS07855: SGL_RS07855 - MASE1 domain-containing protein, at 1,278,326 to 1,280,542
_RS07855
Position (kb)
1277
1278
1279 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1276.602 kb on + strand, within SGL_RS07840 at 1276.609 kb on + strand, within SGL_RS07840 at 1276.619 kb on + strand, within SGL_RS07840 at 1276.627 kb on - strand, within SGL_RS07840 at 1276.801 kb on + strand, within SGL_RS07840 at 1276.934 kb on + strand at 1276.936 kb on - strand at 1276.942 kb on - strand at 1277.127 kb on - strand at 1277.168 kb on + strand, within SGL_RS07845 at 1277.169 kb on + strand, within SGL_RS07845 at 1277.181 kb on + strand, within SGL_RS07845 at 1277.189 kb on - strand, within SGL_RS07845 at 1277.189 kb on - strand, within SGL_RS07845 at 1277.345 kb on - strand, within SGL_RS07845 at 1277.401 kb on - strand at 1277.402 kb on - strand at 1277.421 kb on + strand at 1277.422 kb on + strand at 1277.710 kb on - strand, within SGL_RS07850 at 1277.721 kb on - strand, within SGL_RS07850 at 1277.750 kb on + strand, within SGL_RS07850 at 1277.759 kb on - strand, within SGL_RS07850 at 1277.801 kb on - strand, within SGL_RS07850 at 1277.930 kb on + strand, within SGL_RS07850 at 1278.020 kb on - strand at 1278.348 kb on - strand at 1278.398 kb on + strand at 1278.399 kb on + strand at 1278.407 kb on - strand at 1278.407 kb on - strand at 1278.414 kb on - strand at 1278.416 kb on + strand at 1278.416 kb on + strand at 1278.416 kb on + strand at 1278.416 kb on + strand at 1278.424 kb on - strand at 1278.477 kb on + strand at 1278.519 kb on + strand at 1278.552 kb on - strand, within SGL_RS07855 at 1278.611 kb on - strand, within SGL_RS07855 at 1278.618 kb on - strand, within SGL_RS07855 at 1278.782 kb on + strand, within SGL_RS07855 at 1278.792 kb on + strand, within SGL_RS07855 at 1278.865 kb on + strand, within SGL_RS07855 at 1278.987 kb on + strand, within SGL_RS07855
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 1,276,602 + SGL_RS07840 0.49 -0.2 1,276,609 + SGL_RS07840 0.50 -1.1 1,276,619 + SGL_RS07840 0.51 -1.6 1,276,627 - SGL_RS07840 0.52 +1.8 1,276,801 + SGL_RS07840 0.76 -1.2 1,276,934 + -0.9 1,276,936 - +1.2 1,276,942 - -0.9 1,277,127 - +0.7 1,277,168 + SGL_RS07845 0.21 -2.4 1,277,169 + SGL_RS07845 0.21 -1.6 1,277,181 + SGL_RS07845 0.26 -0.8 1,277,189 - SGL_RS07845 0.28 +1.6 1,277,189 - SGL_RS07845 0.28 +0.3 1,277,345 - SGL_RS07845 0.83 +0.9 1,277,401 - +0.2 1,277,402 - +0.3 1,277,421 + +0.7 1,277,422 + -1.3 1,277,710 - SGL_RS07850 0.42 -2.6 1,277,721 - SGL_RS07850 0.44 -2.3 1,277,750 + SGL_RS07850 0.49 -2.0 1,277,759 - SGL_RS07850 0.50 -1.0 1,277,801 - SGL_RS07850 0.57 -3.5 1,277,930 + SGL_RS07850 0.77 -1.6 1,278,020 - -2.7 1,278,348 - -0.1 1,278,398 + -0.5 1,278,399 + -0.4 1,278,407 - -1.5 1,278,407 - -2.5 1,278,414 - +0.0 1,278,416 + -1.2 1,278,416 + -2.0 1,278,416 + -2.1 1,278,416 + +0.4 1,278,424 - -0.5 1,278,477 + -1.6 1,278,519 + -2.1 1,278,552 - SGL_RS07855 0.10 -1.3 1,278,611 - SGL_RS07855 0.13 -1.2 1,278,618 - SGL_RS07855 0.13 -1.1 1,278,782 + SGL_RS07855 0.21 -0.7 1,278,792 + SGL_RS07855 0.21 -0.4 1,278,865 + SGL_RS07855 0.24 -3.0 1,278,987 + SGL_RS07855 0.30 -0.8
Or see this region's nucleotide sequence