Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS07850

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS07840 and SGL_RS07845 are separated by 125 nucleotidesSGL_RS07845 and SGL_RS07850 are separated by 49 nucleotidesSGL_RS07850 and SGL_RS07855 are separated by 251 nucleotides SGL_RS07840: SGL_RS07840 - SDR family NAD(P)-dependent oxidoreductase, at 1,276,236 to 1,276,982 _RS07840 SGL_RS07845: SGL_RS07845 - DUF427 domain-containing protein, at 1,277,108 to 1,277,392 _RS07845 SGL_RS07850: SGL_RS07850 - response regulator transcription factor, at 1,277,442 to 1,278,074 _RS07850 SGL_RS07855: SGL_RS07855 - MASE1 domain-containing protein, at 1,278,326 to 1,280,542 _RS07855 Position (kb) 1277 1278 1279Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1276.602 kb on + strand, within SGL_RS07840at 1276.609 kb on + strand, within SGL_RS07840at 1276.619 kb on + strand, within SGL_RS07840at 1276.627 kb on - strand, within SGL_RS07840at 1276.801 kb on + strand, within SGL_RS07840at 1276.934 kb on + strandat 1276.936 kb on - strandat 1276.942 kb on - strandat 1277.127 kb on - strandat 1277.168 kb on + strand, within SGL_RS07845at 1277.169 kb on + strand, within SGL_RS07845at 1277.181 kb on + strand, within SGL_RS07845at 1277.189 kb on - strand, within SGL_RS07845at 1277.189 kb on - strand, within SGL_RS07845at 1277.345 kb on - strand, within SGL_RS07845at 1277.401 kb on - strandat 1277.402 kb on - strandat 1277.421 kb on + strandat 1277.422 kb on + strandat 1277.710 kb on - strand, within SGL_RS07850at 1277.721 kb on - strand, within SGL_RS07850at 1277.750 kb on + strand, within SGL_RS07850at 1277.759 kb on - strand, within SGL_RS07850at 1277.801 kb on - strand, within SGL_RS07850at 1277.930 kb on + strand, within SGL_RS07850at 1278.020 kb on - strandat 1278.348 kb on - strandat 1278.398 kb on + strandat 1278.399 kb on + strandat 1278.407 kb on - strandat 1278.407 kb on - strandat 1278.414 kb on - strandat 1278.416 kb on + strandat 1278.416 kb on + strandat 1278.416 kb on + strandat 1278.416 kb on + strandat 1278.424 kb on - strandat 1278.477 kb on + strandat 1278.519 kb on + strandat 1278.552 kb on - strand, within SGL_RS07855at 1278.611 kb on - strand, within SGL_RS07855at 1278.618 kb on - strand, within SGL_RS07855at 1278.782 kb on + strand, within SGL_RS07855at 1278.792 kb on + strand, within SGL_RS07855at 1278.865 kb on + strand, within SGL_RS07855at 1278.987 kb on + strand, within SGL_RS07855

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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1,276,602 + SGL_RS07840 0.49 -0.2
1,276,609 + SGL_RS07840 0.50 -1.1
1,276,619 + SGL_RS07840 0.51 -1.6
1,276,627 - SGL_RS07840 0.52 +1.8
1,276,801 + SGL_RS07840 0.76 -1.2
1,276,934 + -0.9
1,276,936 - +1.2
1,276,942 - -0.9
1,277,127 - +0.7
1,277,168 + SGL_RS07845 0.21 -2.4
1,277,169 + SGL_RS07845 0.21 -1.6
1,277,181 + SGL_RS07845 0.26 -0.8
1,277,189 - SGL_RS07845 0.28 +1.6
1,277,189 - SGL_RS07845 0.28 +0.3
1,277,345 - SGL_RS07845 0.83 +0.9
1,277,401 - +0.2
1,277,402 - +0.3
1,277,421 + +0.7
1,277,422 + -1.3
1,277,710 - SGL_RS07850 0.42 -2.6
1,277,721 - SGL_RS07850 0.44 -2.3
1,277,750 + SGL_RS07850 0.49 -2.0
1,277,759 - SGL_RS07850 0.50 -1.0
1,277,801 - SGL_RS07850 0.57 -3.5
1,277,930 + SGL_RS07850 0.77 -1.6
1,278,020 - -2.7
1,278,348 - -0.1
1,278,398 + -0.5
1,278,399 + -0.4
1,278,407 - -1.5
1,278,407 - -2.5
1,278,414 - +0.0
1,278,416 + -1.2
1,278,416 + -2.0
1,278,416 + -2.1
1,278,416 + +0.4
1,278,424 - -0.5
1,278,477 + -1.6
1,278,519 + -2.1
1,278,552 - SGL_RS07855 0.10 -1.3
1,278,611 - SGL_RS07855 0.13 -1.2
1,278,618 - SGL_RS07855 0.13 -1.1
1,278,782 + SGL_RS07855 0.21 -0.7
1,278,792 + SGL_RS07855 0.21 -0.4
1,278,865 + SGL_RS07855 0.24 -3.0
1,278,987 + SGL_RS07855 0.30 -0.8

Or see this region's nucleotide sequence