Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS07295

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS07285 and SGL_RS07290 overlap by 18 nucleotidesSGL_RS07290 and SGL_RS07295 are separated by 180 nucleotidesSGL_RS07295 and SGL_RS07300 are separated by 31 nucleotides SGL_RS07285: SGL_RS07285 - N-acetylmuramoyl-L-alanine amidase, at 1,159,029 to 1,160,804 _RS07285 SGL_RS07290: SGL_RS07290 - M67 family metallopeptidase, at 1,160,787 to 1,161,260 _RS07290 SGL_RS07295: SGL_RS07295 - hypothetical protein, at 1,161,441 to 1,161,824 _RS07295 SGL_RS07300: SGL_RS07300 - site-2 protease family protein, at 1,161,856 to 1,163,367 _RS07300 Position (kb) 1161 1162Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1160.496 kb on + strand, within SGL_RS07285at 1160.596 kb on - strand, within SGL_RS07285at 1160.862 kb on - strand, within SGL_RS07290at 1160.931 kb on - strand, within SGL_RS07290at 1161.040 kb on - strand, within SGL_RS07290at 1161.118 kb on - strand, within SGL_RS07290at 1161.538 kb on + strand, within SGL_RS07295at 1161.572 kb on - strand, within SGL_RS07295at 1161.572 kb on - strand, within SGL_RS07295at 1161.584 kb on + strand, within SGL_RS07295at 1161.732 kb on + strand, within SGL_RS07295at 1161.732 kb on + strand, within SGL_RS07295at 1161.740 kb on - strand, within SGL_RS07295at 1161.758 kb on - strand, within SGL_RS07295at 1161.758 kb on - strand, within SGL_RS07295at 1161.862 kb on + strandat 1161.874 kb on + strandat 1161.929 kb on - strandat 1161.983 kb on - strandat 1162.028 kb on + strand, within SGL_RS07300at 1162.060 kb on - strand, within SGL_RS07300at 1162.128 kb on - strand, within SGL_RS07300at 1162.212 kb on - strand, within SGL_RS07300at 1162.248 kb on - strand, within SGL_RS07300at 1162.268 kb on - strand, within SGL_RS07300at 1162.815 kb on - strand, within SGL_RS07300

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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1,160,496 + SGL_RS07285 0.83 -4.1
1,160,596 - SGL_RS07285 0.88 -1.0
1,160,862 - SGL_RS07290 0.16 +0.6
1,160,931 - SGL_RS07290 0.30 +0.2
1,161,040 - SGL_RS07290 0.53 -0.9
1,161,118 - SGL_RS07290 0.70 -0.4
1,161,538 + SGL_RS07295 0.25 +0.8
1,161,572 - SGL_RS07295 0.34 +1.7
1,161,572 - SGL_RS07295 0.34 +2.1
1,161,584 + SGL_RS07295 0.37 +1.8
1,161,732 + SGL_RS07295 0.76 +1.8
1,161,732 + SGL_RS07295 0.76 +1.0
1,161,740 - SGL_RS07295 0.78 +1.6
1,161,758 - SGL_RS07295 0.83 +1.3
1,161,758 - SGL_RS07295 0.83 +0.9
1,161,862 + +2.0
1,161,874 + +2.7
1,161,929 - +3.1
1,161,983 - +2.8
1,162,028 + SGL_RS07300 0.11 -0.1
1,162,060 - SGL_RS07300 0.13 +2.7
1,162,128 - SGL_RS07300 0.18 +3.5
1,162,212 - SGL_RS07300 0.24 +3.1
1,162,248 - SGL_RS07300 0.26 +2.4
1,162,268 - SGL_RS07300 0.27 +2.9
1,162,815 - SGL_RS07300 0.63 +2.9

Or see this region's nucleotide sequence