Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS07240

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS07235 and SGL_RS07240 are separated by 105 nucleotidesSGL_RS07240 and SGL_RS07245 are separated by 117 nucleotidesSGL_RS07245 and SGL_RS07250 overlap by 1 nucleotides SGL_RS07235: SGL_RS07235 - lipoyl synthase, at 1,150,122 to 1,151,033 _RS07235 SGL_RS07240: SGL_RS07240 - aldo/keto reductase, at 1,151,139 to 1,152,431 _RS07240 SGL_RS07245: SGL_RS07245 - 3-oxoacyl-[acyl-carrier-protein] reductase, at 1,152,549 to 1,153,292 _RS07245 SGL_RS07250: SGL_RS07250 - aminotransferase class IV, at 1,153,292 to 1,154,101 _RS07250 Position (kb) 1151 1152 1153Strain fitness (log2 ratio) -3 -2 -1 0 1at 1150.642 kb on - strand, within SGL_RS07235at 1150.669 kb on + strand, within SGL_RS07235at 1151.003 kb on - strandat 1151.156 kb on + strandat 1151.314 kb on - strand, within SGL_RS07240at 1151.317 kb on + strand, within SGL_RS07240at 1151.322 kb on + strand, within SGL_RS07240at 1151.414 kb on + strand, within SGL_RS07240at 1151.421 kb on + strand, within SGL_RS07240at 1151.434 kb on - strand, within SGL_RS07240at 1151.449 kb on + strand, within SGL_RS07240at 1151.455 kb on + strand, within SGL_RS07240at 1151.463 kb on - strand, within SGL_RS07240at 1151.473 kb on + strand, within SGL_RS07240at 1151.494 kb on + strand, within SGL_RS07240at 1151.556 kb on + strand, within SGL_RS07240at 1151.664 kb on + strand, within SGL_RS07240at 1151.671 kb on - strand, within SGL_RS07240at 1151.709 kb on - strand, within SGL_RS07240at 1151.711 kb on - strand, within SGL_RS07240at 1151.762 kb on - strand, within SGL_RS07240at 1151.800 kb on + strand, within SGL_RS07240at 1151.906 kb on - strand, within SGL_RS07240at 1151.984 kb on - strand, within SGL_RS07240at 1152.138 kb on + strand, within SGL_RS07240at 1152.191 kb on + strand, within SGL_RS07240at 1152.199 kb on - strand, within SGL_RS07240at 1152.208 kb on + strand, within SGL_RS07240at 1152.209 kb on - strand, within SGL_RS07240at 1152.268 kb on + strand, within SGL_RS07240at 1152.272 kb on + strand, within SGL_RS07240at 1152.351 kb on - strandat 1152.420 kb on - strandat 1152.420 kb on - strandat 1152.463 kb on - strandat 1152.470 kb on - strandat 1153.323 kb on + strandat 1153.363 kb on + strandat 1153.371 kb on - strandat 1153.371 kb on - strandat 1153.397 kb on - strand, within SGL_RS07250at 1153.428 kb on - strand, within SGL_RS07250

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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1,150,642 - SGL_RS07235 0.57 +0.3
1,150,669 + SGL_RS07235 0.60 +0.0
1,151,003 - -1.5
1,151,156 + -1.3
1,151,314 - SGL_RS07240 0.14 -1.2
1,151,317 + SGL_RS07240 0.14 -1.4
1,151,322 + SGL_RS07240 0.14 +0.3
1,151,414 + SGL_RS07240 0.21 -2.2
1,151,421 + SGL_RS07240 0.22 -2.0
1,151,434 - SGL_RS07240 0.23 -2.1
1,151,449 + SGL_RS07240 0.24 -0.6
1,151,455 + SGL_RS07240 0.24 -2.1
1,151,463 - SGL_RS07240 0.25 -1.8
1,151,473 + SGL_RS07240 0.26 -3.0
1,151,494 + SGL_RS07240 0.27 +0.4
1,151,556 + SGL_RS07240 0.32 -0.5
1,151,664 + SGL_RS07240 0.41 -0.9
1,151,671 - SGL_RS07240 0.41 -2.3
1,151,709 - SGL_RS07240 0.44 -1.6
1,151,711 - SGL_RS07240 0.44 -1.3
1,151,762 - SGL_RS07240 0.48 -0.5
1,151,800 + SGL_RS07240 0.51 -1.8
1,151,906 - SGL_RS07240 0.59 -1.2
1,151,984 - SGL_RS07240 0.65 -2.1
1,152,138 + SGL_RS07240 0.77 -0.7
1,152,191 + SGL_RS07240 0.81 +1.2
1,152,199 - SGL_RS07240 0.82 -1.8
1,152,208 + SGL_RS07240 0.83 -1.9
1,152,209 - SGL_RS07240 0.83 -1.3
1,152,268 + SGL_RS07240 0.87 -3.3
1,152,272 + SGL_RS07240 0.88 -1.3
1,152,351 - -0.8
1,152,420 - +0.9
1,152,420 - +0.6
1,152,463 - -0.1
1,152,470 - -0.5
1,153,323 + -0.7
1,153,363 + -1.1
1,153,371 - +0.1
1,153,371 - -1.3
1,153,397 - SGL_RS07250 0.13 +0.7
1,153,428 - SGL_RS07250 0.17 +0.7

Or see this region's nucleotide sequence