Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS07140

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS07130 and SGL_RS07135 are separated by 126 nucleotidesSGL_RS07135 and SGL_RS07140 are separated by 16 nucleotidesSGL_RS07140 and SGL_RS07145 are separated by 14 nucleotidesSGL_RS07145 and SGL_RS07150 are separated by 188 nucleotides SGL_RS07130: SGL_RS07130 - AAA-like domain-containing protein, at 1,130,313 to 1,131,683 _RS07130 SGL_RS07135: SGL_RS07135 - large conductance mechanosensitive channel protein MscL, at 1,131,810 to 1,132,247 _RS07135 SGL_RS07140: SGL_RS07140 - Holliday junction branch migration protein RuvA, at 1,132,264 to 1,132,899 _RS07140 SGL_RS07145: SGL_RS07145 - TIGR00297 family protein, at 1,132,914 to 1,133,690 _RS07145 SGL_RS07150: SGL_RS07150 - FAD/NAD(P)-binding oxidoreductase, at 1,133,879 to 1,135,108 _RS07150 Position (kb) 1132 1133Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 1131.301 kb on + strand, within SGL_RS07130at 1131.398 kb on + strand, within SGL_RS07130at 1131.406 kb on - strand, within SGL_RS07130at 1131.434 kb on + strand, within SGL_RS07130at 1131.611 kb on + strandat 1131.978 kb on + strand, within SGL_RS07135at 1131.986 kb on - strand, within SGL_RS07135at 1131.986 kb on - strand, within SGL_RS07135at 1132.147 kb on + strand, within SGL_RS07135at 1133.170 kb on - strand, within SGL_RS07145at 1133.308 kb on + strand, within SGL_RS07145at 1133.452 kb on + strand, within SGL_RS07145at 1133.511 kb on + strand, within SGL_RS07145at 1133.548 kb on - strand, within SGL_RS07145at 1133.755 kb on - strandat 1133.818 kb on + strandat 1133.818 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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1,131,301 + SGL_RS07130 0.72 -5.5
1,131,398 + SGL_RS07130 0.79 -3.4
1,131,406 - SGL_RS07130 0.80 -3.0
1,131,434 + SGL_RS07130 0.82 -5.2
1,131,611 + -3.3
1,131,978 + SGL_RS07135 0.38 +1.0
1,131,986 - SGL_RS07135 0.40 +1.5
1,131,986 - SGL_RS07135 0.40 +1.2
1,132,147 + SGL_RS07135 0.77 -0.7
1,133,170 - SGL_RS07145 0.33 +0.0
1,133,308 + SGL_RS07145 0.51 -0.2
1,133,452 + SGL_RS07145 0.69 +2.8
1,133,511 + SGL_RS07145 0.77 +0.3
1,133,548 - SGL_RS07145 0.82 +1.8
1,133,755 - -1.5
1,133,818 + -1.0
1,133,818 + -0.7

Or see this region's nucleotide sequence