Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS06915

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS06905 and SGL_RS06910 are separated by 156 nucleotidesSGL_RS06910 and SGL_RS06915 are separated by 342 nucleotidesSGL_RS06915 and SGL_RS06920 are separated by 44 nucleotides SGL_RS06905: SGL_RS06905 - Uma2 family endonuclease, at 1,076,474 to 1,077,010 _RS06905 SGL_RS06910: SGL_RS06910 - DUF2442 domain-containing protein, at 1,077,167 to 1,077,412 _RS06910 SGL_RS06915: SGL_RS06915 - RnfABCDGE type electron transport complex subunit D, at 1,077,755 to 1,078,612 _RS06915 SGL_RS06920: SGL_RS06920 - serine/threonine protein kinase, at 1,078,657 to 1,080,501 _RS06920 Position (kb) 1077 1078 1079Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1076.787 kb on + strand, within SGL_RS06905at 1076.824 kb on - strand, within SGL_RS06905at 1076.865 kb on + strand, within SGL_RS06905at 1077.158 kb on + strandat 1077.230 kb on - strand, within SGL_RS06910at 1077.367 kb on + strand, within SGL_RS06910at 1077.616 kb on - strandat 1077.695 kb on - strandat 1077.706 kb on - strandat 1077.835 kb on + strandat 1077.877 kb on - strand, within SGL_RS06915at 1077.877 kb on - strand, within SGL_RS06915at 1078.247 kb on + strand, within SGL_RS06915at 1078.373 kb on - strand, within SGL_RS06915at 1078.384 kb on + strand, within SGL_RS06915at 1078.393 kb on - strand, within SGL_RS06915at 1078.438 kb on - strand, within SGL_RS06915at 1078.499 kb on + strand, within SGL_RS06915at 1078.681 kb on - strandat 1078.776 kb on + strandat 1078.854 kb on - strand, within SGL_RS06920at 1078.915 kb on - strand, within SGL_RS06920at 1079.056 kb on - strand, within SGL_RS06920at 1079.074 kb on + strand, within SGL_RS06920at 1079.195 kb on + strand, within SGL_RS06920at 1079.195 kb on + strand, within SGL_RS06920at 1079.195 kb on + strand, within SGL_RS06920at 1079.195 kb on + strand, within SGL_RS06920at 1079.195 kb on + strand, within SGL_RS06920at 1079.195 kb on + strand, within SGL_RS06920at 1079.195 kb on + strand, within SGL_RS06920at 1079.195 kb on + strand, within SGL_RS06920at 1079.195 kb on + strand, within SGL_RS06920at 1079.195 kb on + strand, within SGL_RS06920at 1079.195 kb on + strand, within SGL_RS06920at 1079.195 kb on + strand, within SGL_RS06920at 1079.203 kb on - strand, within SGL_RS06920at 1079.203 kb on - strand, within SGL_RS06920at 1079.203 kb on - strand, within SGL_RS06920at 1079.203 kb on - strand, within SGL_RS06920at 1079.203 kb on - strand, within SGL_RS06920at 1079.203 kb on - strand, within SGL_RS06920at 1079.490 kb on - strand, within SGL_RS06920at 1079.601 kb on + strand, within SGL_RS06920at 1079.602 kb on + strand, within SGL_RS06920at 1079.602 kb on + strand, within SGL_RS06920at 1079.602 kb on + strand, within SGL_RS06920at 1079.602 kb on + strand, within SGL_RS06920at 1079.602 kb on + strand, within SGL_RS06920at 1079.602 kb on + strand, within SGL_RS06920at 1079.602 kb on + strand, within SGL_RS06920at 1079.602 kb on + strand, within SGL_RS06920at 1079.610 kb on - strand, within SGL_RS06920at 1079.610 kb on - strand, within SGL_RS06920at 1079.610 kb on - strand, within SGL_RS06920at 1079.610 kb on - strand, within SGL_RS06920

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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1,076,787 + SGL_RS06905 0.58 +0.7
1,076,824 - SGL_RS06905 0.65 +1.2
1,076,865 + SGL_RS06905 0.73 +1.0
1,077,158 + -1.4
1,077,230 - SGL_RS06910 0.26 -0.0
1,077,367 + SGL_RS06910 0.81 +0.7
1,077,616 - +1.6
1,077,695 - -0.1
1,077,706 - +0.5
1,077,835 + -1.7
1,077,877 - SGL_RS06915 0.14 -2.9
1,077,877 - SGL_RS06915 0.14 -0.3
1,078,247 + SGL_RS06915 0.57 -1.8
1,078,373 - SGL_RS06915 0.72 -3.4
1,078,384 + SGL_RS06915 0.73 -1.2
1,078,393 - SGL_RS06915 0.74 -2.6
1,078,438 - SGL_RS06915 0.80 -3.7
1,078,499 + SGL_RS06915 0.87 -1.4
1,078,681 - -2.1
1,078,776 + +0.0
1,078,854 - SGL_RS06920 0.11 -1.4
1,078,915 - SGL_RS06920 0.14 +0.3
1,079,056 - SGL_RS06920 0.22 -1.0
1,079,074 + SGL_RS06920 0.23 -0.0
1,079,195 + SGL_RS06920 0.29 -2.2
1,079,195 + SGL_RS06920 0.29 -1.4
1,079,195 + SGL_RS06920 0.29 -1.6
1,079,195 + SGL_RS06920 0.29 -1.8
1,079,195 + SGL_RS06920 0.29 -0.9
1,079,195 + SGL_RS06920 0.29 -1.7
1,079,195 + SGL_RS06920 0.29 -1.9
1,079,195 + SGL_RS06920 0.29 -0.9
1,079,195 + SGL_RS06920 0.29 -0.6
1,079,195 + SGL_RS06920 0.29 -1.5
1,079,195 + SGL_RS06920 0.29 -1.3
1,079,195 + SGL_RS06920 0.29 -0.0
1,079,203 - SGL_RS06920 0.30 -0.9
1,079,203 - SGL_RS06920 0.30 -1.4
1,079,203 - SGL_RS06920 0.30 -2.4
1,079,203 - SGL_RS06920 0.30 -1.4
1,079,203 - SGL_RS06920 0.30 +0.5
1,079,203 - SGL_RS06920 0.30 -0.5
1,079,490 - SGL_RS06920 0.45 -3.4
1,079,601 + SGL_RS06920 0.51 -4.3
1,079,602 + SGL_RS06920 0.51 -0.3
1,079,602 + SGL_RS06920 0.51 -2.7
1,079,602 + SGL_RS06920 0.51 -2.9
1,079,602 + SGL_RS06920 0.51 -3.4
1,079,602 + SGL_RS06920 0.51 -4.5
1,079,602 + SGL_RS06920 0.51 -3.1
1,079,602 + SGL_RS06920 0.51 -2.8
1,079,602 + SGL_RS06920 0.51 -5.0
1,079,610 - SGL_RS06920 0.52 -1.3
1,079,610 - SGL_RS06920 0.52 -4.3
1,079,610 - SGL_RS06920 0.52 -3.4
1,079,610 - SGL_RS06920 0.52 -3.6

Or see this region's nucleotide sequence