Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS06875

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS06865 and SGL_RS06870 are separated by 193 nucleotidesSGL_RS06870 and SGL_RS06875 are separated by 37 nucleotidesSGL_RS06875 and SGL_RS06880 are separated by 167 nucleotidesSGL_RS06880 and SGL_RS06885 are separated by 56 nucleotides SGL_RS06865: SGL_RS06865 - isoleucine--tRNA ligase, at 1,062,238 to 1,065,204 _RS06865 SGL_RS06870: SGL_RS06870 - hypothetical protein, at 1,065,398 to 1,065,622 _RS06870 SGL_RS06875: SGL_RS06875 - DNA polymerase III subunit gamma/tau, at 1,065,660 to 1,069,010 _RS06875 SGL_RS06880: SGL_RS06880 - VOC family protein, at 1,069,178 to 1,069,609 _RS06880 SGL_RS06885: SGL_RS06885 - c-type cytochrome, at 1,069,666 to 1,071,702 _RS06885 Position (kb) 1065 1066 1067 1068 1069 1070Strain fitness (log2 ratio) -1 0 1at 1065.285 kb on + strandat 1065.319 kb on - strandat 1065.348 kb on - strandat 1069.146 kb on + strandat 1069.261 kb on + strand, within SGL_RS06880at 1069.261 kb on + strand, within SGL_RS06880at 1069.363 kb on + strand, within SGL_RS06880at 1069.531 kb on - strand, within SGL_RS06880at 1069.799 kb on + strandat 1069.846 kb on + strandat 1069.846 kb on + strandat 1069.985 kb on + strand, within SGL_RS06885

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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1,065,285 + +0.4
1,065,319 - -0.3
1,065,348 - -0.1
1,069,146 + +1.5
1,069,261 + SGL_RS06880 0.19 -0.6
1,069,261 + SGL_RS06880 0.19 -0.3
1,069,363 + SGL_RS06880 0.43 +0.0
1,069,531 - SGL_RS06880 0.82 +0.0
1,069,799 + -0.0
1,069,846 + +1.2
1,069,846 + -1.4
1,069,985 + SGL_RS06885 0.16 -1.4

Or see this region's nucleotide sequence