Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS06725

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS06720 and SGL_RS06725 are separated by 359 nucleotidesSGL_RS06725 and SGL_RS06730 are separated by 175 nucleotides SGL_RS06720: SGL_RS06720 - SH3 domain-containing protein, at 1,039,196 to 1,039,732 _RS06720 SGL_RS06725: SGL_RS06725 - hypothetical protein, at 1,040,092 to 1,040,355 _RS06725 SGL_RS06730: SGL_RS06730 - succinate dehydrogenase/fumarate reductase flavoprotein subunit, at 1,040,531 to 1,042,258 _RS06730 Position (kb) 1040 1041Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1039.365 kb on - strand, within SGL_RS06720at 1039.632 kb on - strand, within SGL_RS06720at 1039.644 kb on + strand, within SGL_RS06720at 1039.691 kb on - strandat 1039.691 kb on - strandat 1039.692 kb on + strandat 1039.858 kb on + strandat 1039.891 kb on + strandat 1039.899 kb on - strandat 1040.147 kb on - strand, within SGL_RS06725at 1040.185 kb on + strand, within SGL_RS06725at 1040.218 kb on - strand, within SGL_RS06725at 1040.248 kb on - strand, within SGL_RS06725at 1040.473 kb on + strandat 1040.613 kb on + strandat 1040.632 kb on + strandat 1040.734 kb on - strand, within SGL_RS06730at 1040.755 kb on + strand, within SGL_RS06730at 1041.175 kb on - strand, within SGL_RS06730at 1041.327 kb on + strand, within SGL_RS06730

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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1,039,365 - SGL_RS06720 0.31 -0.5
1,039,632 - SGL_RS06720 0.81 +2.1
1,039,644 + SGL_RS06720 0.83 -1.6
1,039,691 - -0.9
1,039,691 - -0.6
1,039,692 + -0.6
1,039,858 + +0.1
1,039,891 + -0.8
1,039,899 - -0.6
1,040,147 - SGL_RS06725 0.21 -1.8
1,040,185 + SGL_RS06725 0.35 -2.9
1,040,218 - SGL_RS06725 0.48 -3.0
1,040,248 - SGL_RS06725 0.59 -2.3
1,040,473 + -1.3
1,040,613 + +0.4
1,040,632 + -0.7
1,040,734 - SGL_RS06730 0.12 +0.4
1,040,755 + SGL_RS06730 0.13 -1.3
1,041,175 - SGL_RS06730 0.37 -1.1
1,041,327 + SGL_RS06730 0.46 -1.9

Or see this region's nucleotide sequence