Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS06125 and SGL_RS06130 are separated by 6 nucleotides SGL_RS06130 and SGL_RS06135 are separated by 119 nucleotides SGL_RS06135 and SGL_RS06140 are separated by 362 nucleotides
SGL_RS06125: SGL_RS06125 - triacylglycerol lipase, at 908,353 to 908,961
_RS06125
SGL_RS06130: SGL_RS06130 - anti-sigma regulatory factor, at 908,968 to 909,483
_RS06130
SGL_RS06135: SGL_RS06135 - 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD, at 909,603 to 910,994
_RS06135
SGL_RS06140: SGL_RS06140 - threonine ammonia-lyase, biosynthetic, at 911,357 to 912,883
_RS06140
Position (kb) 909
910
911 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 908.606 kb on - strand, within SGL_RS06125 at 908.616 kb on - strand, within SGL_RS06125 at 908.629 kb on - strand, within SGL_RS06125 at 908.824 kb on + strand, within SGL_RS06125 at 908.843 kb on - strand, within SGL_RS06125 at 908.843 kb on - strand, within SGL_RS06125 at 908.850 kb on - strand, within SGL_RS06125 at 908.860 kb on - strand, within SGL_RS06125 at 908.928 kb on - strand at 909.200 kb on - strand, within SGL_RS06130 at 909.221 kb on + strand, within SGL_RS06130 at 909.226 kb on + strand, within SGL_RS06130 at 909.348 kb on - strand, within SGL_RS06130 at 909.354 kb on - strand, within SGL_RS06130 at 909.372 kb on - strand, within SGL_RS06130 at 909.495 kb on - strand at 909.519 kb on - strand at 909.579 kb on + strand at 909.606 kb on + strand at 909.669 kb on + strand at 909.733 kb on - strand at 909.797 kb on + strand, within SGL_RS06135 at 909.813 kb on - strand, within SGL_RS06135 at 909.831 kb on - strand, within SGL_RS06135 at 909.932 kb on + strand, within SGL_RS06135 at 909.934 kb on + strand, within SGL_RS06135 at 909.940 kb on - strand, within SGL_RS06135 at 909.940 kb on - strand, within SGL_RS06135 at 910.046 kb on - strand, within SGL_RS06135 at 910.099 kb on - strand, within SGL_RS06135 at 910.280 kb on - strand, within SGL_RS06135 at 910.306 kb on + strand, within SGL_RS06135 at 910.364 kb on + strand, within SGL_RS06135 at 910.364 kb on + strand, within SGL_RS06135 at 910.372 kb on - strand, within SGL_RS06135 at 910.401 kb on + strand, within SGL_RS06135 at 910.521 kb on - strand, within SGL_RS06135 at 910.565 kb on - strand, within SGL_RS06135 at 910.595 kb on - strand, within SGL_RS06135 at 910.605 kb on + strand, within SGL_RS06135 at 910.607 kb on + strand, within SGL_RS06135 at 910.615 kb on - strand, within SGL_RS06135 at 910.623 kb on - strand, within SGL_RS06135 at 910.658 kb on - strand, within SGL_RS06135 at 910.747 kb on - strand, within SGL_RS06135 at 910.758 kb on + strand, within SGL_RS06135 at 910.774 kb on - strand, within SGL_RS06135 at 910.856 kb on - strand at 911.037 kb on + strand at 911.203 kb on - strand at 911.272 kb on + strand at 911.272 kb on + strand at 911.277 kb on + strand at 911.280 kb on - strand at 911.285 kb on - strand at 911.403 kb on - strand at 911.597 kb on - strand, within SGL_RS06140 at 911.597 kb on - strand, within SGL_RS06140 at 911.605 kb on + strand, within SGL_RS06140 at 911.666 kb on - strand, within SGL_RS06140 at 911.735 kb on + strand, within SGL_RS06140 at 911.735 kb on + strand, within SGL_RS06140 at 911.863 kb on - strand, within SGL_RS06140 at 911.905 kb on - strand, within SGL_RS06140 at 911.922 kb on + strand, within SGL_RS06140 at 911.930 kb on - strand, within SGL_RS06140
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 908,606 - SGL_RS06125 0.42 -0.2 908,616 - SGL_RS06125 0.43 -2.2 908,629 - SGL_RS06125 0.45 -0.2 908,824 + SGL_RS06125 0.77 -1.2 908,843 - SGL_RS06125 0.80 +0.0 908,843 - SGL_RS06125 0.80 -0.4 908,850 - SGL_RS06125 0.82 +1.3 908,860 - SGL_RS06125 0.83 -0.0 908,928 - -0.4 909,200 - SGL_RS06130 0.45 -1.3 909,221 + SGL_RS06130 0.49 -2.4 909,226 + SGL_RS06130 0.50 -0.4 909,348 - SGL_RS06130 0.74 -1.3 909,354 - SGL_RS06130 0.75 -1.0 909,372 - SGL_RS06130 0.78 -1.4 909,495 - +0.1 909,519 - -3.2 909,579 + -0.6 909,606 + +0.3 909,669 + +1.4 909,733 - +0.7 909,797 + SGL_RS06135 0.14 +0.4 909,813 - SGL_RS06135 0.15 +1.4 909,831 - SGL_RS06135 0.16 +1.3 909,932 + SGL_RS06135 0.24 +1.1 909,934 + SGL_RS06135 0.24 +2.0 909,940 - SGL_RS06135 0.24 +2.1 909,940 - SGL_RS06135 0.24 -0.4 910,046 - SGL_RS06135 0.32 +0.7 910,099 - SGL_RS06135 0.36 +2.2 910,280 - SGL_RS06135 0.49 -0.0 910,306 + SGL_RS06135 0.51 +0.4 910,364 + SGL_RS06135 0.55 +0.9 910,364 + SGL_RS06135 0.55 +0.1 910,372 - SGL_RS06135 0.55 +1.3 910,401 + SGL_RS06135 0.57 +1.9 910,521 - SGL_RS06135 0.66 -0.0 910,565 - SGL_RS06135 0.69 +2.9 910,595 - SGL_RS06135 0.71 +1.6 910,605 + SGL_RS06135 0.72 +1.1 910,607 + SGL_RS06135 0.72 +1.4 910,615 - SGL_RS06135 0.73 +2.7 910,623 - SGL_RS06135 0.73 +1.0 910,658 - SGL_RS06135 0.76 -0.4 910,747 - SGL_RS06135 0.82 +0.7 910,758 + SGL_RS06135 0.83 +2.3 910,774 - SGL_RS06135 0.84 +2.5 910,856 - +0.7 911,037 + +0.6 911,203 - -0.3 911,272 + -1.7 911,272 + +0.1 911,277 + -0.8 911,280 - +1.0 911,285 - -1.4 911,403 - +5.2 911,597 - SGL_RS06140 0.16 +5.2 911,597 - SGL_RS06140 0.16 +5.5 911,605 + SGL_RS06140 0.16 +4.8 911,666 - SGL_RS06140 0.20 +5.6 911,735 + SGL_RS06140 0.25 +4.5 911,735 + SGL_RS06140 0.25 +5.0 911,863 - SGL_RS06140 0.33 +4.2 911,905 - SGL_RS06140 0.36 +5.1 911,922 + SGL_RS06140 0.37 +4.6 911,930 - SGL_RS06140 0.38 +4.7
Or see this region's nucleotide sequence