Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS05960

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS05955 and SGL_RS05960 are separated by 98 nucleotidesSGL_RS05960 and SGL_RS05965 are separated by 194 nucleotides SGL_RS05955: SGL_RS05955 - ATP-dependent helicase, at 867,257 to 869,569 _RS05955 SGL_RS05960: SGL_RS05960 - chromosome segregation protein SMC, at 869,668 to 873,270 _RS05960 SGL_RS05965: SGL_RS05965 - phosphotransferase enzyme family protein, at 873,465 to 874,550 _RS05965 Position (kb) 869 870 871 872 873 874Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 868.733 kb on + strand, within SGL_RS05955at 868.733 kb on + strand, within SGL_RS05955at 868.733 kb on - strand, within SGL_RS05955at 868.733 kb on - strand, within SGL_RS05955at 868.733 kb on - strand, within SGL_RS05955at 868.734 kb on - strand, within SGL_RS05955at 868.797 kb on - strand, within SGL_RS05955at 869.015 kb on + strand, within SGL_RS05955at 869.023 kb on - strand, within SGL_RS05955at 869.089 kb on - strand, within SGL_RS05955at 869.168 kb on + strand, within SGL_RS05955at 869.173 kb on + strand, within SGL_RS05955at 869.194 kb on - strand, within SGL_RS05955at 869.204 kb on + strand, within SGL_RS05955at 869.204 kb on + strand, within SGL_RS05955at 869.212 kb on - strand, within SGL_RS05955at 869.221 kb on + strand, within SGL_RS05955at 869.224 kb on - strand, within SGL_RS05955at 869.276 kb on - strand, within SGL_RS05955at 869.374 kb on - strandat 869.438 kb on + strandat 869.444 kb on + strandat 869.543 kb on + strandat 869.561 kb on - strandat 869.720 kb on - strandat 869.905 kb on + strandat 869.920 kb on + strandat 869.923 kb on - strandat 871.004 kb on - strand, within SGL_RS05960at 871.006 kb on - strand, within SGL_RS05960at 871.123 kb on + strand, within SGL_RS05960at 871.131 kb on - strand, within SGL_RS05960at 871.493 kb on + strand, within SGL_RS05960at 871.493 kb on + strand, within SGL_RS05960at 871.501 kb on - strand, within SGL_RS05960at 871.682 kb on + strand, within SGL_RS05960at 871.684 kb on + strand, within SGL_RS05960at 871.709 kb on - strand, within SGL_RS05960at 871.754 kb on + strand, within SGL_RS05960at 871.759 kb on + strand, within SGL_RS05960at 871.851 kb on - strand, within SGL_RS05960at 871.978 kb on + strand, within SGL_RS05960at 872.080 kb on + strand, within SGL_RS05960at 872.292 kb on - strand, within SGL_RS05960at 872.353 kb on + strand, within SGL_RS05960at 872.360 kb on + strand, within SGL_RS05960at 872.360 kb on + strand, within SGL_RS05960at 872.360 kb on + strand, within SGL_RS05960at 872.360 kb on + strand, within SGL_RS05960at 872.517 kb on + strand, within SGL_RS05960at 872.604 kb on + strand, within SGL_RS05960at 872.798 kb on - strand, within SGL_RS05960at 872.805 kb on + strand, within SGL_RS05960at 872.805 kb on - strand, within SGL_RS05960at 872.810 kb on + strand, within SGL_RS05960at 872.863 kb on + strand, within SGL_RS05960at 872.888 kb on + strand, within SGL_RS05960at 872.908 kb on - strand, within SGL_RS05960at 873.044 kb on - strandat 873.182 kb on - strandat 873.182 kb on - strandat 873.285 kb on + strandat 873.492 kb on - strandat 873.580 kb on + strand, within SGL_RS05965at 873.588 kb on - strand, within SGL_RS05965at 873.588 kb on - strand, within SGL_RS05965at 873.589 kb on - strand, within SGL_RS05965at 873.665 kb on - strand, within SGL_RS05965at 873.698 kb on + strand, within SGL_RS05965at 873.789 kb on + strand, within SGL_RS05965at 873.807 kb on - strand, within SGL_RS05965at 873.878 kb on + strand, within SGL_RS05965at 873.941 kb on - strand, within SGL_RS05965at 873.959 kb on - strand, within SGL_RS05965at 873.984 kb on + strand, within SGL_RS05965at 873.997 kb on - strand, within SGL_RS05965

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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868,733 + SGL_RS05955 0.64 +0.9
868,733 + SGL_RS05955 0.64 +1.3
868,733 - SGL_RS05955 0.64 +0.6
868,733 - SGL_RS05955 0.64 +0.1
868,733 - SGL_RS05955 0.64 -0.1
868,734 - SGL_RS05955 0.64 +0.1
868,797 - SGL_RS05955 0.67 +1.7
869,015 + SGL_RS05955 0.76 -0.1
869,023 - SGL_RS05955 0.76 +0.7
869,089 - SGL_RS05955 0.79 -0.2
869,168 + SGL_RS05955 0.83 +0.4
869,173 + SGL_RS05955 0.83 -0.0
869,194 - SGL_RS05955 0.84 -1.6
869,204 + SGL_RS05955 0.84 -0.1
869,204 + SGL_RS05955 0.84 +0.1
869,212 - SGL_RS05955 0.85 +0.7
869,221 + SGL_RS05955 0.85 -0.0
869,224 - SGL_RS05955 0.85 +1.1
869,276 - SGL_RS05955 0.87 +0.1
869,374 - -1.1
869,438 + +0.0
869,444 + +0.3
869,543 + +0.7
869,561 - -0.4
869,720 - -3.0
869,905 + -0.8
869,920 + -3.1
869,923 - -2.7
871,004 - SGL_RS05960 0.37 -2.7
871,006 - SGL_RS05960 0.37 -1.4
871,123 + SGL_RS05960 0.40 -2.8
871,131 - SGL_RS05960 0.41 -1.9
871,493 + SGL_RS05960 0.51 -1.3
871,493 + SGL_RS05960 0.51 -2.0
871,501 - SGL_RS05960 0.51 -1.8
871,682 + SGL_RS05960 0.56 -0.6
871,684 + SGL_RS05960 0.56 -2.8
871,709 - SGL_RS05960 0.57 -2.8
871,754 + SGL_RS05960 0.58 -3.0
871,759 + SGL_RS05960 0.58 -3.8
871,851 - SGL_RS05960 0.61 -2.0
871,978 + SGL_RS05960 0.64 -1.6
872,080 + SGL_RS05960 0.67 -1.0
872,292 - SGL_RS05960 0.73 -2.8
872,353 + SGL_RS05960 0.75 -1.5
872,360 + SGL_RS05960 0.75 -2.0
872,360 + SGL_RS05960 0.75 -4.3
872,360 + SGL_RS05960 0.75 -1.8
872,360 + SGL_RS05960 0.75 -1.4
872,517 + SGL_RS05960 0.79 -2.9
872,604 + SGL_RS05960 0.81 -1.7
872,798 - SGL_RS05960 0.87 -1.8
872,805 + SGL_RS05960 0.87 -3.2
872,805 - SGL_RS05960 0.87 -0.1
872,810 + SGL_RS05960 0.87 -3.5
872,863 + SGL_RS05960 0.89 -1.2
872,888 + SGL_RS05960 0.89 -3.0
872,908 - SGL_RS05960 0.90 +1.1
873,044 - -0.8
873,182 - -3.1
873,182 - -3.7
873,285 + -1.4
873,492 - -1.1
873,580 + SGL_RS05965 0.11 +0.7
873,588 - SGL_RS05965 0.11 +0.5
873,588 - SGL_RS05965 0.11 -0.5
873,589 - SGL_RS05965 0.11 +0.0
873,665 - SGL_RS05965 0.18 -0.5
873,698 + SGL_RS05965 0.21 -2.0
873,789 + SGL_RS05965 0.30 -1.4
873,807 - SGL_RS05965 0.31 -1.1
873,878 + SGL_RS05965 0.38 -0.6
873,941 - SGL_RS05965 0.44 -1.7
873,959 - SGL_RS05965 0.45 +0.2
873,984 + SGL_RS05965 0.48 +0.8
873,997 - SGL_RS05965 0.49 +0.2

Or see this region's nucleotide sequence