Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS05660

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS05655 and SGL_RS05660 are separated by 156 nucleotidesSGL_RS05660 and SGL_RS05665 are separated by 122 nucleotides SGL_RS05655: SGL_RS05655 - TPM domain-containing protein, at 816,983 to 817,810 _RS05655 SGL_RS05660: SGL_RS05660 - transketolase, at 817,967 to 819,979 _RS05660 SGL_RS05665: SGL_RS05665 - beta-ketoacyl-ACP synthase II, at 820,102 to 821,352 _RS05665 Position (kb) 817 818 819 820Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5 6 7 8 9at 817.263 kb on + strand, within SGL_RS05655at 817.263 kb on + strand, within SGL_RS05655at 817.263 kb on + strand, within SGL_RS05655at 817.263 kb on + strand, within SGL_RS05655at 817.296 kb on + strand, within SGL_RS05655at 817.576 kb on - strand, within SGL_RS05655at 817.865 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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817,263 + SGL_RS05655 0.34 +7.6
817,263 + SGL_RS05655 0.34 +7.7
817,263 + SGL_RS05655 0.34 +8.4
817,263 + SGL_RS05655 0.34 +8.6
817,296 + SGL_RS05655 0.38 +7.7
817,576 - SGL_RS05655 0.72 +9.1
817,865 - -1.8

Or see this region's nucleotide sequence