Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS04645 and SGL_RS04650 are separated by 210 nucleotides SGL_RS04650 and SGL_RS04655 are separated by 82 nucleotides SGL_RS04655 and SGL_RS04660 are separated by 186 nucleotides
SGL_RS04645: SGL_RS04645 - PhoH family protein, at 593,257 to 594,243
_RS04645
SGL_RS04650: SGL_RS04650 - tetratricopeptide repeat protein, at 594,454 to 595,650
_RS04650
SGL_RS04655: SGL_RS04655 - phycobiliprotein lyase, at 595,733 to 596,311
_RS04655
SGL_RS04660: SGL_RS04660 - phycobilisome rod-core linker polypeptide, at 596,498 to 597,247
_RS04660
Position (kb) 594
595
596 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4
5
6
7
8
9
10 at 593.517 kb on - strand, within SGL_RS04645 at 593.562 kb on + strand, within SGL_RS04645 at 593.619 kb on + strand, within SGL_RS04645 at 594.006 kb on - strand, within SGL_RS04645 at 594.172 kb on + strand at 594.179 kb on + strand at 594.191 kb on + strand at 594.233 kb on - strand at 594.485 kb on - strand at 594.585 kb on - strand, within SGL_RS04650 at 594.631 kb on - strand, within SGL_RS04650 at 594.694 kb on + strand, within SGL_RS04650 at 594.696 kb on - strand, within SGL_RS04650 at 594.804 kb on - strand, within SGL_RS04650 at 594.996 kb on - strand, within SGL_RS04650 at 595.006 kb on - strand, within SGL_RS04650 at 595.041 kb on - strand, within SGL_RS04650 at 595.123 kb on + strand, within SGL_RS04650 at 595.154 kb on - strand, within SGL_RS04650 at 595.189 kb on + strand, within SGL_RS04650 at 595.198 kb on - strand, within SGL_RS04650 at 595.220 kb on - strand, within SGL_RS04650 at 595.258 kb on + strand, within SGL_RS04650 at 595.267 kb on - strand, within SGL_RS04650 at 595.312 kb on - strand, within SGL_RS04650 at 595.321 kb on - strand, within SGL_RS04650 at 595.454 kb on + strand, within SGL_RS04650 at 595.524 kb on + strand, within SGL_RS04650 at 595.524 kb on + strand, within SGL_RS04650 at 595.594 kb on + strand at 595.664 kb on + strand at 596.489 kb on + strand at 596.509 kb on - strand at 596.570 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 593,517 - SGL_RS04645 0.26 -0.6 593,562 + SGL_RS04645 0.31 +1.1 593,619 + SGL_RS04645 0.37 +2.5 594,006 - SGL_RS04645 0.76 +1.2 594,172 + -1.3 594,179 + +2.3 594,191 + +0.1 594,233 - +0.5 594,485 - +2.2 594,585 - SGL_RS04650 0.11 -3.0 594,631 - SGL_RS04650 0.15 -3.7 594,694 + SGL_RS04650 0.20 +0.7 594,696 - SGL_RS04650 0.20 -2.2 594,804 - SGL_RS04650 0.29 -3.2 594,996 - SGL_RS04650 0.45 -1.2 595,006 - SGL_RS04650 0.46 -4.1 595,041 - SGL_RS04650 0.49 -4.1 595,123 + SGL_RS04650 0.56 -3.5 595,154 - SGL_RS04650 0.58 -3.6 595,189 + SGL_RS04650 0.61 -0.7 595,198 - SGL_RS04650 0.62 -4.6 595,220 - SGL_RS04650 0.64 -3.4 595,258 + SGL_RS04650 0.67 -3.6 595,267 - SGL_RS04650 0.68 -3.2 595,312 - SGL_RS04650 0.72 -3.2 595,321 - SGL_RS04650 0.72 -3.6 595,454 + SGL_RS04650 0.84 -3.9 595,524 + SGL_RS04650 0.89 -3.3 595,524 + SGL_RS04650 0.89 -4.1 595,594 + -4.1 595,664 + -0.7 596,489 + +9.6 596,509 - +10.2 596,570 + +9.5
Or see this region's nucleotide sequence