Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS04600 and SGL_RS04605 are separated by 75 nucleotides SGL_RS04605 and SGL_RS04610 are separated by 3 nucleotides SGL_RS04610 and SGL_RS04615 are separated by 64 nucleotides SGL_RS04615 and SGL_RS04620 are separated by 106 nucleotides
SGL_RS04600: SGL_RS04600 - hypothetical protein, at 581,518 to 582,162
_RS04600
SGL_RS04605: SGL_RS04605 - hypothetical protein, at 582,238 to 582,477
_RS04605
SGL_RS04610: SGL_RS04610 - Uma2 family endonuclease, at 582,481 to 583,092
_RS04610
SGL_RS04615: SGL_RS04615 - Fur family transcriptional regulator, at 583,157 to 583,573
_RS04615
SGL_RS04620: SGL_RS04620 - zinc ABC transporter substrate-binding protein, at 583,680 to 584,696
_RS04620
Position (kb) 583
584 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 582.173 kb on + strand at 582.180 kb on + strand at 582.367 kb on + strand, within SGL_RS04605 at 582.392 kb on + strand, within SGL_RS04605 at 582.400 kb on - strand, within SGL_RS04605 at 582.584 kb on + strand, within SGL_RS04610 at 582.686 kb on + strand, within SGL_RS04610 at 582.767 kb on + strand, within SGL_RS04610 at 583.115 kb on + strand at 583.115 kb on + strand at 583.149 kb on + strand at 583.269 kb on - strand, within SGL_RS04615 at 583.272 kb on + strand, within SGL_RS04615 at 583.306 kb on - strand, within SGL_RS04615 at 583.335 kb on - strand, within SGL_RS04615 at 583.400 kb on + strand, within SGL_RS04615 at 583.416 kb on + strand, within SGL_RS04615 at 583.521 kb on - strand, within SGL_RS04615 at 583.521 kb on - strand, within SGL_RS04615 at 583.527 kb on + strand, within SGL_RS04615 at 583.662 kb on - strand at 583.672 kb on - strand at 583.672 kb on - strand at 583.672 kb on - strand at 583.672 kb on - strand at 583.748 kb on - strand at 583.750 kb on + strand at 583.778 kb on - strand at 583.900 kb on + strand, within SGL_RS04620 at 583.930 kb on + strand, within SGL_RS04620 at 583.959 kb on + strand, within SGL_RS04620 at 583.967 kb on - strand, within SGL_RS04620 at 583.981 kb on + strand, within SGL_RS04620 at 584.031 kb on - strand, within SGL_RS04620 at 584.041 kb on - strand, within SGL_RS04620 at 584.042 kb on - strand, within SGL_RS04620 at 584.077 kb on - strand, within SGL_RS04620 at 584.191 kb on - strand, within SGL_RS04620 at 584.216 kb on + strand, within SGL_RS04620 at 584.227 kb on + strand, within SGL_RS04620 at 584.384 kb on - strand, within SGL_RS04620 at 584.453 kb on - strand, within SGL_RS04620 at 584.569 kb on + strand, within SGL_RS04620
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 582,173 + -2.3 582,180 + -2.0 582,367 + SGL_RS04605 0.54 -1.2 582,392 + SGL_RS04605 0.64 -0.7 582,400 - SGL_RS04605 0.68 +0.7 582,584 + SGL_RS04610 0.17 -0.8 582,686 + SGL_RS04610 0.33 -0.3 582,767 + SGL_RS04610 0.47 +0.2 583,115 + +0.7 583,115 + -0.6 583,149 + +1.2 583,269 - SGL_RS04615 0.27 -0.5 583,272 + SGL_RS04615 0.28 -3.9 583,306 - SGL_RS04615 0.36 -3.0 583,335 - SGL_RS04615 0.43 -3.2 583,400 + SGL_RS04615 0.58 -2.2 583,416 + SGL_RS04615 0.62 -2.1 583,521 - SGL_RS04615 0.87 -1.7 583,521 - SGL_RS04615 0.87 -4.1 583,527 + SGL_RS04615 0.89 -3.2 583,662 - +0.6 583,672 - +0.6 583,672 - -0.2 583,672 - +0.5 583,672 - +0.3 583,748 - +1.4 583,750 + -0.6 583,778 - +1.7 583,900 + SGL_RS04620 0.22 -0.0 583,930 + SGL_RS04620 0.25 +0.8 583,959 + SGL_RS04620 0.27 +4.6 583,967 - SGL_RS04620 0.28 +1.9 583,981 + SGL_RS04620 0.30 +0.1 584,031 - SGL_RS04620 0.35 +1.6 584,041 - SGL_RS04620 0.35 +1.3 584,042 - SGL_RS04620 0.36 +1.0 584,077 - SGL_RS04620 0.39 -0.5 584,191 - SGL_RS04620 0.50 +1.0 584,216 + SGL_RS04620 0.53 +0.8 584,227 + SGL_RS04620 0.54 +0.7 584,384 - SGL_RS04620 0.69 +2.6 584,453 - SGL_RS04620 0.76 +2.1 584,569 + SGL_RS04620 0.87 -1.2
Or see this region's nucleotide sequence