Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS04540

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS04525 and SGL_RS04530 are separated by 85 nucleotidesSGL_RS04530 and SGL_RS04535 are separated by 36 nucleotidesSGL_RS04535 and SGL_RS04540 are separated by 9 nucleotidesSGL_RS04540 and SGL_RS04545 are separated by 32 nucleotidesSGL_RS04545 and SGL_RS04550 are separated by 84 nucleotides SGL_RS04525: SGL_RS04525 - photosynthesis system II assembly factor Ycf48, at 569,544 to 570,572 _RS04525 SGL_RS04530: SGL_RS04530 - cytochrome b559 subunit alpha, at 570,658 to 570,903 _RS04530 SGL_RS04535: SGL_RS04535 - cytochrome b559 subunit beta, at 570,940 to 571,074 _RS04535 SGL_RS04540: SGL_RS04540 - photosystem II reaction center protein L, at 571,084 to 571,203 _RS04540 SGL_RS04545: SGL_RS04545 - photosystem II reaction center protein J, at 571,236 to 571,355 _RS04545 SGL_RS04550: SGL_RS04550 - glutamate 5-kinase, at 571,440 to 572,567 _RS04550 Position (kb) 571 572Strain fitness (log2 ratio) -1 0 1 2at 570.277 kb on - strand, within SGL_RS04525at 570.409 kb on + strand, within SGL_RS04525at 571.281 kb on - strand, within SGL_RS04545at 571.520 kb on - strandat 571.570 kb on + strand, within SGL_RS04550at 571.808 kb on - strand, within SGL_RS04550at 571.829 kb on - strand, within SGL_RS04550at 571.829 kb on - strand, within SGL_RS04550at 571.924 kb on + strand, within SGL_RS04550at 571.998 kb on + strand, within SGL_RS04550

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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570,277 - SGL_RS04525 0.71 +0.4
570,409 + SGL_RS04525 0.84 -0.8
571,281 - SGL_RS04545 0.38 -1.2
571,520 - +1.4
571,570 + SGL_RS04550 0.12 +2.0
571,808 - SGL_RS04550 0.33 +1.4
571,829 - SGL_RS04550 0.34 -0.0
571,829 - SGL_RS04550 0.34 +0.7
571,924 + SGL_RS04550 0.43 +0.6
571,998 + SGL_RS04550 0.49 +1.1

Or see this region's nucleotide sequence