Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS03685

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS18670 and SGL_RS03685 are separated by 116 nucleotidesSGL_RS03685 and SGL_RS03690 are separated by 1 nucleotides SGL_RS18670: SGL_RS18670 - IS630-like element ISTcSa family transposase, at 379,065 to 379,913 _RS18670 SGL_RS03685: SGL_RS03685 - glycosyltransferase, at 380,030 to 381,175 _RS03685 SGL_RS03690: SGL_RS03690 - glycosyltransferase, at 381,177 to 382,337 _RS03690 Position (kb) 380 381 382Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 379.955 kb on + strandat 380.053 kb on + strandat 380.344 kb on - strand, within SGL_RS03685at 380.375 kb on - strand, within SGL_RS03685at 380.389 kb on + strand, within SGL_RS03685at 380.402 kb on - strand, within SGL_RS03685at 380.486 kb on - strand, within SGL_RS03685at 380.674 kb on - strand, within SGL_RS03685at 380.729 kb on - strand, within SGL_RS03685at 380.869 kb on - strand, within SGL_RS03685at 380.920 kb on - strand, within SGL_RS03685at 380.920 kb on - strand, within SGL_RS03685at 380.971 kb on + strand, within SGL_RS03685at 380.971 kb on + strand, within SGL_RS03685at 380.998 kb on - strand, within SGL_RS03685at 381.016 kb on - strand, within SGL_RS03685at 381.301 kb on + strand, within SGL_RS03690at 381.308 kb on + strand, within SGL_RS03690at 381.309 kb on - strand, within SGL_RS03690at 381.346 kb on - strand, within SGL_RS03690at 381.423 kb on + strand, within SGL_RS03690at 381.445 kb on + strand, within SGL_RS03690at 381.453 kb on - strand, within SGL_RS03690at 381.457 kb on + strand, within SGL_RS03690at 381.458 kb on - strand, within SGL_RS03690at 381.465 kb on - strand, within SGL_RS03690at 381.465 kb on - strand, within SGL_RS03690at 381.465 kb on - strand, within SGL_RS03690at 381.465 kb on - strand, within SGL_RS03690at 381.507 kb on + strand, within SGL_RS03690at 381.539 kb on + strand, within SGL_RS03690at 381.578 kb on - strand, within SGL_RS03690at 381.591 kb on + strand, within SGL_RS03690at 381.592 kb on + strand, within SGL_RS03690at 381.592 kb on + strand, within SGL_RS03690at 381.600 kb on - strand, within SGL_RS03690at 381.661 kb on - strand, within SGL_RS03690at 381.668 kb on - strand, within SGL_RS03690at 381.777 kb on + strand, within SGL_RS03690at 381.785 kb on - strand, within SGL_RS03690at 381.867 kb on - strand, within SGL_RS03690at 381.934 kb on - strand, within SGL_RS03690at 381.953 kb on + strand, within SGL_RS03690at 381.953 kb on + strand, within SGL_RS03690at 381.994 kb on - strand, within SGL_RS03690at 382.002 kb on + strand, within SGL_RS03690at 382.089 kb on + strand, within SGL_RS03690at 382.135 kb on + strand, within SGL_RS03690at 382.140 kb on - strand, within SGL_RS03690at 382.143 kb on - strand, within SGL_RS03690

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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379,955 + +1.0
380,053 + -3.6
380,344 - SGL_RS03685 0.27 -3.0
380,375 - SGL_RS03685 0.30 -4.7
380,389 + SGL_RS03685 0.31 -4.2
380,402 - SGL_RS03685 0.32 -1.7
380,486 - SGL_RS03685 0.40 -3.9
380,674 - SGL_RS03685 0.56 -4.2
380,729 - SGL_RS03685 0.61 -1.4
380,869 - SGL_RS03685 0.73 -3.7
380,920 - SGL_RS03685 0.78 -4.4
380,920 - SGL_RS03685 0.78 +0.1
380,971 + SGL_RS03685 0.82 -4.9
380,971 + SGL_RS03685 0.82 -4.8
380,998 - SGL_RS03685 0.84 -4.3
381,016 - SGL_RS03685 0.86 -2.4
381,301 + SGL_RS03690 0.11 -3.1
381,308 + SGL_RS03690 0.11 -2.8
381,309 - SGL_RS03690 0.11 -4.6
381,346 - SGL_RS03690 0.15 -0.4
381,423 + SGL_RS03690 0.21 -3.4
381,445 + SGL_RS03690 0.23 -2.3
381,453 - SGL_RS03690 0.24 -2.7
381,457 + SGL_RS03690 0.24 -1.4
381,458 - SGL_RS03690 0.24 -3.6
381,465 - SGL_RS03690 0.25 -2.4
381,465 - SGL_RS03690 0.25 -2.9
381,465 - SGL_RS03690 0.25 -1.4
381,465 - SGL_RS03690 0.25 -1.3
381,507 + SGL_RS03690 0.28 -4.4
381,539 + SGL_RS03690 0.31 -3.3
381,578 - SGL_RS03690 0.35 -2.0
381,591 + SGL_RS03690 0.36 -1.3
381,592 + SGL_RS03690 0.36 -2.0
381,592 + SGL_RS03690 0.36 -1.3
381,600 - SGL_RS03690 0.36 +0.1
381,661 - SGL_RS03690 0.42 -1.2
381,668 - SGL_RS03690 0.42 -2.9
381,777 + SGL_RS03690 0.52 -2.8
381,785 - SGL_RS03690 0.52 -2.3
381,867 - SGL_RS03690 0.59 +0.0
381,934 - SGL_RS03690 0.65 -2.5
381,953 + SGL_RS03690 0.67 -0.8
381,953 + SGL_RS03690 0.67 -1.3
381,994 - SGL_RS03690 0.70 -2.5
382,002 + SGL_RS03690 0.71 -2.2
382,089 + SGL_RS03690 0.79 -3.0
382,135 + SGL_RS03690 0.83 -3.3
382,140 - SGL_RS03690 0.83 -2.1
382,143 - SGL_RS03690 0.83 -1.9

Or see this region's nucleotide sequence