Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS03390

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS03385 and SGL_RS03390 are separated by 99 nucleotidesSGL_RS03390 and SGL_RS03395 are separated by 143 nucleotides SGL_RS03385: SGL_RS03385 - FTR1 family protein, at 323,805 to 324,731 _RS03385 SGL_RS03390: SGL_RS03390 - DNA polymerase III subunit beta, at 324,831 to 326,006 _RS03390 SGL_RS03395: SGL_RS03395 - tryptophan synthase subunit alpha, at 326,150 to 326,944 _RS03395 Position (kb) 324 325 326 327Strain fitness (log2 ratio) -1 0 1 2at 324.055 kb on - strand, within SGL_RS03385at 324.182 kb on + strand, within SGL_RS03385at 324.240 kb on + strand, within SGL_RS03385at 324.248 kb on - strand, within SGL_RS03385at 324.248 kb on - strand, within SGL_RS03385at 324.391 kb on - strand, within SGL_RS03385at 324.414 kb on + strand, within SGL_RS03385at 324.510 kb on + strand, within SGL_RS03385at 324.702 kb on + strandat 324.808 kb on - strandat 326.078 kb on - strandat 326.305 kb on + strand, within SGL_RS03395at 326.801 kb on - strand, within SGL_RS03395

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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324,055 - SGL_RS03385 0.27 +0.1
324,182 + SGL_RS03385 0.41 +0.3
324,240 + SGL_RS03385 0.47 -1.1
324,248 - SGL_RS03385 0.48 -0.5
324,248 - SGL_RS03385 0.48 +0.9
324,391 - SGL_RS03385 0.63 +0.3
324,414 + SGL_RS03385 0.66 +0.2
324,510 + SGL_RS03385 0.76 +1.2
324,702 + +0.5
324,808 - +2.4
326,078 - +1.8
326,305 + SGL_RS03395 0.19 +0.0
326,801 - SGL_RS03395 0.82 +1.2

Or see this region's nucleotide sequence