Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS03380

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS03375 and SGL_RS03380 are separated by 251 nucleotidesSGL_RS03380 and SGL_RS03385 are separated by 198 nucleotides SGL_RS03375: SGL_RS03375 - hypothetical protein, at 320,785 to 321,447 _RS03375 SGL_RS03380: SGL_RS03380 - sulfite reductase, ferredoxin dependent, at 321,699 to 323,606 _RS03380 SGL_RS03385: SGL_RS03385 - FTR1 family protein, at 323,805 to 324,731 _RS03385 Position (kb) 321 322 323 324Strain fitness (log2 ratio) -2 -1 0 1 2 3at 320.703 kb on + strandat 320.909 kb on + strand, within SGL_RS03375at 320.928 kb on + strand, within SGL_RS03375at 321.116 kb on - strand, within SGL_RS03375at 321.176 kb on + strand, within SGL_RS03375at 321.176 kb on + strand, within SGL_RS03375at 321.176 kb on + strand, within SGL_RS03375at 321.240 kb on - strand, within SGL_RS03375at 321.332 kb on + strand, within SGL_RS03375at 321.351 kb on - strand, within SGL_RS03375at 321.368 kb on + strand, within SGL_RS03375at 321.387 kb on + strandat 321.388 kb on + strandat 321.505 kb on + strandat 321.611 kb on - strandat 321.701 kb on - strandat 321.732 kb on - strandat 321.918 kb on - strand, within SGL_RS03380at 321.956 kb on + strand, within SGL_RS03380at 321.956 kb on + strand, within SGL_RS03380at 321.956 kb on + strand, within SGL_RS03380at 321.964 kb on - strand, within SGL_RS03380at 321.964 kb on - strand, within SGL_RS03380at 322.258 kb on + strand, within SGL_RS03380at 322.417 kb on - strand, within SGL_RS03380at 322.816 kb on - strand, within SGL_RS03380at 322.920 kb on + strand, within SGL_RS03380at 322.930 kb on + strand, within SGL_RS03380at 322.958 kb on + strand, within SGL_RS03380at 323.039 kb on + strand, within SGL_RS03380at 323.204 kb on + strand, within SGL_RS03380at 323.204 kb on + strand, within SGL_RS03380at 323.212 kb on - strand, within SGL_RS03380at 323.212 kb on - strand, within SGL_RS03380at 323.238 kb on + strand, within SGL_RS03380at 323.248 kb on - strand, within SGL_RS03380at 323.305 kb on - strand, within SGL_RS03380at 323.427 kb on - strandat 323.525 kb on + strandat 324.055 kb on - strand, within SGL_RS03385at 324.182 kb on + strand, within SGL_RS03385at 324.240 kb on + strand, within SGL_RS03385at 324.248 kb on - strand, within SGL_RS03385at 324.248 kb on - strand, within SGL_RS03385at 324.391 kb on - strand, within SGL_RS03385at 324.414 kb on + strand, within SGL_RS03385at 324.510 kb on + strand, within SGL_RS03385

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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320,703 + -1.5
320,909 + SGL_RS03375 0.19 -1.4
320,928 + SGL_RS03375 0.22 -1.2
321,116 - SGL_RS03375 0.50 -1.0
321,176 + SGL_RS03375 0.59 -0.3
321,176 + SGL_RS03375 0.59 -0.4
321,176 + SGL_RS03375 0.59 +0.5
321,240 - SGL_RS03375 0.69 -0.6
321,332 + SGL_RS03375 0.83 -1.5
321,351 - SGL_RS03375 0.85 -0.3
321,368 + SGL_RS03375 0.88 +3.2
321,387 + -0.1
321,388 + +0.4
321,505 + -2.4
321,611 - +0.1
321,701 - -2.2
321,732 - -1.3
321,918 - SGL_RS03380 0.11 -2.6
321,956 + SGL_RS03380 0.13 -0.4
321,956 + SGL_RS03380 0.13 -1.3
321,956 + SGL_RS03380 0.13 -1.9
321,964 - SGL_RS03380 0.14 -1.4
321,964 - SGL_RS03380 0.14 -0.7
322,258 + SGL_RS03380 0.29 -2.2
322,417 - SGL_RS03380 0.38 -0.5
322,816 - SGL_RS03380 0.59 -1.6
322,920 + SGL_RS03380 0.64 -1.5
322,930 + SGL_RS03380 0.65 -1.8
322,958 + SGL_RS03380 0.66 -0.3
323,039 + SGL_RS03380 0.70 -2.3
323,204 + SGL_RS03380 0.79 -2.1
323,204 + SGL_RS03380 0.79 -2.7
323,212 - SGL_RS03380 0.79 -1.3
323,212 - SGL_RS03380 0.79 -1.0
323,238 + SGL_RS03380 0.81 -0.3
323,248 - SGL_RS03380 0.81 -1.6
323,305 - SGL_RS03380 0.84 -1.1
323,427 - -1.9
323,525 + -0.4
324,055 - SGL_RS03385 0.27 +0.1
324,182 + SGL_RS03385 0.41 +0.3
324,240 + SGL_RS03385 0.47 -1.1
324,248 - SGL_RS03385 0.48 -0.5
324,248 - SGL_RS03385 0.48 +0.9
324,391 - SGL_RS03385 0.63 +0.3
324,414 + SGL_RS03385 0.66 +0.2
324,510 + SGL_RS03385 0.76 +1.2

Or see this region's nucleotide sequence