Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS03130

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS03125 and SGL_RS03130 are separated by 45 nucleotidesSGL_RS03130 and SGL_RS03135 are separated by 40 nucleotidesSGL_RS03135 and SGL_RS03140 are separated by 61 nucleotides SGL_RS03125: SGL_RS03125 - glycosyltransferase, at 268,789 to 269,727 _RS03125 SGL_RS03130: SGL_RS03130 - HEAT repeat domain-containing protein, at 269,773 to 270,435 _RS03130 SGL_RS03135: SGL_RS03135 - prephenate dehydratase, at 270,476 to 271,369 _RS03135 SGL_RS03140: SGL_RS03140 - tRNA-Thr, at 271,431 to 271,502 _RS03140 Position (kb) 269 270 271Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 268.829 kb on - strandat 269.870 kb on - strand, within SGL_RS03130at 270.071 kb on - strand, within SGL_RS03130at 270.077 kb on - strand, within SGL_RS03130at 270.170 kb on - strand, within SGL_RS03130at 270.178 kb on + strand, within SGL_RS03130at 270.220 kb on + strand, within SGL_RS03130at 270.468 kb on - strandat 270.468 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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268,829 - -0.9
269,870 - SGL_RS03130 0.15 -1.8
270,071 - SGL_RS03130 0.45 -3.9
270,077 - SGL_RS03130 0.46 -3.4
270,170 - SGL_RS03130 0.60 -5.4
270,178 + SGL_RS03130 0.61 -3.2
270,220 + SGL_RS03130 0.67 -4.0
270,468 - -0.7
270,468 - -3.3

Or see this region's nucleotide sequence