Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS02800 and SGL_RS02805 are separated by 80 nucleotides SGL_RS02805 and SGL_RS02810 are separated by 75 nucleotides SGL_RS02810 and SGL_RS02815 are separated by 219 nucleotides
SGL_RS02800: SGL_RS02800 - hypothetical protein, at 196,611 to 196,991
_RS02800
SGL_RS02805: SGL_RS02805 - universal stress protein, at 197,072 to 197,557
_RS02805
SGL_RS02810: SGL_RS02810 - EAL domain-containing protein, at 197,633 to 200,185
_RS02810
SGL_RS02815: SGL_RS02815 - EAL domain-containing protein, at 200,405 to 202,525
_RS02815
Position (kb) 197
198
199
200
201 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 196.763 kb on - strand, within SGL_RS02800 at 196.851 kb on + strand, within SGL_RS02800 at 196.882 kb on - strand, within SGL_RS02800 at 196.973 kb on + strand at 196.981 kb on - strand at 197.152 kb on + strand, within SGL_RS02805 at 197.152 kb on + strand, within SGL_RS02805 at 197.153 kb on + strand, within SGL_RS02805 at 197.155 kb on + strand, within SGL_RS02805 at 197.160 kb on - strand, within SGL_RS02805 at 197.276 kb on - strand, within SGL_RS02805 at 197.423 kb on + strand, within SGL_RS02805 at 197.423 kb on - strand, within SGL_RS02805 at 197.433 kb on - strand, within SGL_RS02805 at 197.445 kb on - strand, within SGL_RS02805 at 197.519 kb on + strand at 197.655 kb on + strand at 197.708 kb on + strand at 197.791 kb on + strand at 197.868 kb on + strand at 197.874 kb on - strand at 198.006 kb on + strand, within SGL_RS02810 at 198.235 kb on - strand, within SGL_RS02810 at 198.305 kb on + strand, within SGL_RS02810 at 198.340 kb on + strand, within SGL_RS02810 at 198.464 kb on - strand, within SGL_RS02810 at 198.523 kb on - strand, within SGL_RS02810 at 198.555 kb on + strand, within SGL_RS02810 at 198.583 kb on - strand, within SGL_RS02810 at 198.691 kb on - strand, within SGL_RS02810 at 198.794 kb on + strand, within SGL_RS02810 at 198.802 kb on - strand, within SGL_RS02810 at 198.802 kb on - strand, within SGL_RS02810 at 198.807 kb on - strand, within SGL_RS02810 at 198.875 kb on + strand, within SGL_RS02810 at 198.924 kb on + strand, within SGL_RS02810 at 199.054 kb on - strand, within SGL_RS02810 at 199.155 kb on + strand, within SGL_RS02810 at 199.225 kb on - strand, within SGL_RS02810 at 199.486 kb on - strand, within SGL_RS02810 at 199.532 kb on + strand, within SGL_RS02810 at 199.701 kb on + strand, within SGL_RS02810 at 199.761 kb on - strand, within SGL_RS02810 at 199.834 kb on + strand, within SGL_RS02810 at 199.849 kb on - strand, within SGL_RS02810 at 200.040 kb on - strand at 200.108 kb on - strand at 200.394 kb on + strand at 200.695 kb on - strand, within SGL_RS02815 at 200.722 kb on + strand, within SGL_RS02815 at 200.730 kb on - strand, within SGL_RS02815 at 200.730 kb on - strand, within SGL_RS02815 at 200.730 kb on - strand, within SGL_RS02815 at 200.779 kb on + strand, within SGL_RS02815 at 200.794 kb on + strand, within SGL_RS02815 at 200.855 kb on - strand, within SGL_RS02815 at 200.927 kb on - strand, within SGL_RS02815 at 201.012 kb on + strand, within SGL_RS02815
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 196,763 - SGL_RS02800 0.40 -0.3 196,851 + SGL_RS02800 0.63 -1.0 196,882 - SGL_RS02800 0.71 -0.4 196,973 + -4.1 196,981 - +0.7 197,152 + SGL_RS02805 0.16 -0.2 197,152 + SGL_RS02805 0.16 -0.9 197,153 + SGL_RS02805 0.17 +0.0 197,155 + SGL_RS02805 0.17 -0.6 197,160 - SGL_RS02805 0.18 -1.6 197,276 - SGL_RS02805 0.42 -1.2 197,423 + SGL_RS02805 0.72 +0.2 197,423 - SGL_RS02805 0.72 -0.2 197,433 - SGL_RS02805 0.74 -2.1 197,445 - SGL_RS02805 0.77 -0.4 197,519 + -0.4 197,655 + +1.1 197,708 + +1.5 197,791 + +0.8 197,868 + -0.3 197,874 - +0.9 198,006 + SGL_RS02810 0.15 +0.4 198,235 - SGL_RS02810 0.24 -2.1 198,305 + SGL_RS02810 0.26 +1.3 198,340 + SGL_RS02810 0.28 +2.8 198,464 - SGL_RS02810 0.33 +0.1 198,523 - SGL_RS02810 0.35 +0.3 198,555 + SGL_RS02810 0.36 -0.7 198,583 - SGL_RS02810 0.37 +0.6 198,691 - SGL_RS02810 0.41 +0.8 198,794 + SGL_RS02810 0.45 +0.2 198,802 - SGL_RS02810 0.46 +0.4 198,802 - SGL_RS02810 0.46 +1.9 198,807 - SGL_RS02810 0.46 +0.2 198,875 + SGL_RS02810 0.49 -0.8 198,924 + SGL_RS02810 0.51 -0.4 199,054 - SGL_RS02810 0.56 +0.9 199,155 + SGL_RS02810 0.60 +0.7 199,225 - SGL_RS02810 0.62 +0.3 199,486 - SGL_RS02810 0.73 -0.2 199,532 + SGL_RS02810 0.74 +1.6 199,701 + SGL_RS02810 0.81 +0.4 199,761 - SGL_RS02810 0.83 +1.8 199,834 + SGL_RS02810 0.86 +0.4 199,849 - SGL_RS02810 0.87 +0.4 200,040 - +0.9 200,108 - -0.8 200,394 + -1.3 200,695 - SGL_RS02815 0.14 -0.8 200,722 + SGL_RS02815 0.15 -0.8 200,730 - SGL_RS02815 0.15 +0.0 200,730 - SGL_RS02815 0.15 +0.2 200,730 - SGL_RS02815 0.15 +0.3 200,779 + SGL_RS02815 0.18 -0.4 200,794 + SGL_RS02815 0.18 -1.0 200,855 - SGL_RS02815 0.21 +0.8 200,927 - SGL_RS02815 0.25 +0.7 201,012 + SGL_RS02815 0.29 -0.5
Or see this region's nucleotide sequence