Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS02645 and SGL_RS02655 are separated by 380 nucleotides SGL_RS02655 and SGL_RS02660 are separated by 12 nucleotides SGL_RS02660 and SGL_RS02665 are separated by 5 nucleotides
SGL_RS02645: SGL_RS02645 - diflavin flavoprotein, at 166,416 to 168,152
_RS02645
SGL_RS02655: SGL_RS02655 - S41 family peptidase, at 168,533 to 169,921
_RS02655
SGL_RS02660: SGL_RS02660 - L-threonylcarbamoyladenylate synthase, at 169,934 to 170,566
_RS02660
SGL_RS02665: SGL_RS02665 - nickel pincer cofactor biosynthesis protein LarC, at 170,572 to 171,840
_RS02665
Position (kb) 168
169
170 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 167.610 kb on + strand, within SGL_RS02645 at 167.708 kb on + strand, within SGL_RS02645 at 167.794 kb on - strand, within SGL_RS02645 at 168.006 kb on - strand at 168.009 kb on + strand at 168.036 kb on + strand at 168.511 kb on + strand at 168.518 kb on - strand at 168.609 kb on + strand at 168.610 kb on - strand at 168.612 kb on - strand at 168.626 kb on + strand at 168.648 kb on + strand at 168.704 kb on - strand, within SGL_RS02655 at 168.714 kb on - strand, within SGL_RS02655 at 168.799 kb on + strand, within SGL_RS02655 at 169.156 kb on - strand, within SGL_RS02655 at 169.362 kb on + strand, within SGL_RS02655 at 169.369 kb on - strand, within SGL_RS02655 at 169.542 kb on + strand, within SGL_RS02655 at 169.585 kb on + strand, within SGL_RS02655 at 169.761 kb on + strand, within SGL_RS02655 at 169.969 kb on - strand at 170.164 kb on - strand, within SGL_RS02660 at 170.351 kb on - strand, within SGL_RS02660 at 170.377 kb on + strand, within SGL_RS02660 at 170.458 kb on - strand, within SGL_RS02660 at 170.482 kb on - strand, within SGL_RS02660
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 167,610 + SGL_RS02645 0.69 -1.0 167,708 + SGL_RS02645 0.74 +0.3 167,794 - SGL_RS02645 0.79 -1.8 168,006 - -1.0 168,009 + +0.6 168,036 + -0.6 168,511 + -3.9 168,518 - -1.0 168,609 + -0.0 168,610 - -3.6 168,612 - -2.6 168,626 + -4.2 168,648 + -3.1 168,704 - SGL_RS02655 0.12 -2.9 168,714 - SGL_RS02655 0.13 -2.5 168,799 + SGL_RS02655 0.19 -5.0 169,156 - SGL_RS02655 0.45 -3.6 169,362 + SGL_RS02655 0.60 -5.3 169,369 - SGL_RS02655 0.60 -4.5 169,542 + SGL_RS02655 0.73 -2.6 169,585 + SGL_RS02655 0.76 -4.5 169,761 + SGL_RS02655 0.88 -3.7 169,969 - -0.0 170,164 - SGL_RS02660 0.36 +0.0 170,351 - SGL_RS02660 0.66 -1.4 170,377 + SGL_RS02660 0.70 -0.8 170,458 - SGL_RS02660 0.83 +2.6 170,482 - SGL_RS02660 0.87 +3.1
Or see this region's nucleotide sequence