Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS02075

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS02065 and SGL_RS02070 are separated by 24 nucleotidesSGL_RS02070 and SGL_RS02075 are separated by 14 nucleotidesSGL_RS02075 and SGL_RS18635 are separated by 364 nucleotides SGL_RS02065: SGL_RS02065 - DUF4336 domain-containing protein, at 48,663 to 49,868 _RS02065 SGL_RS02070: SGL_RS02070 - photosystem II reaction center protein Psb28, at 49,893 to 50,231 _RS02070 SGL_RS02075: SGL_RS02075 - ATP-dependent DNA helicase, at 50,246 to 51,895 _RS02075 SGL_RS18635: SGL_RS18635 - IS630-like element ISTcSa family transposase, at 52,260 to 53,108 _RS18635 Position (kb) 50 51 52Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 49.276 kb on - strand, within SGL_RS02065at 49.481 kb on + strand, within SGL_RS02065at 49.565 kb on + strand, within SGL_RS02065at 49.565 kb on + strand, within SGL_RS02065at 49.736 kb on + strand, within SGL_RS02065at 49.744 kb on - strand, within SGL_RS02065at 49.816 kb on + strandat 49.821 kb on + strandat 49.830 kb on + strandat 50.143 kb on + strand, within SGL_RS02070at 50.323 kb on - strandat 50.352 kb on - strandat 50.377 kb on + strandat 50.378 kb on + strandat 50.385 kb on - strandat 50.473 kb on - strand, within SGL_RS02075at 50.489 kb on + strand, within SGL_RS02075at 50.614 kb on + strand, within SGL_RS02075at 50.671 kb on + strand, within SGL_RS02075at 50.682 kb on + strand, within SGL_RS02075at 50.685 kb on - strand, within SGL_RS02075at 50.722 kb on - strand, within SGL_RS02075at 50.737 kb on - strand, within SGL_RS02075at 50.798 kb on + strand, within SGL_RS02075at 50.806 kb on - strand, within SGL_RS02075at 50.806 kb on - strand, within SGL_RS02075at 50.909 kb on - strand, within SGL_RS02075at 51.042 kb on - strand, within SGL_RS02075at 51.101 kb on - strand, within SGL_RS02075at 51.126 kb on + strand, within SGL_RS02075at 51.169 kb on - strand, within SGL_RS02075at 51.323 kb on + strand, within SGL_RS02075at 51.323 kb on + strand, within SGL_RS02075at 51.323 kb on + strand, within SGL_RS02075at 51.331 kb on - strand, within SGL_RS02075at 51.331 kb on - strand, within SGL_RS02075at 51.337 kb on - strand, within SGL_RS02075at 51.394 kb on + strand, within SGL_RS02075at 51.425 kb on - strand, within SGL_RS02075at 51.874 kb on + strandat 51.982 kb on + strandat 51.990 kb on - strandat 52.221 kb on - strandat 52.221 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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49,276 - SGL_RS02065 0.51 +0.6
49,481 + SGL_RS02065 0.68 +0.2
49,565 + SGL_RS02065 0.75 -0.3
49,565 + SGL_RS02065 0.75 -1.3
49,736 + SGL_RS02065 0.89 -0.3
49,744 - SGL_RS02065 0.90 +0.5
49,816 + +1.5
49,821 + +0.7
49,830 + -0.0
50,143 + SGL_RS02070 0.74 +1.4
50,323 - -0.6
50,352 - -0.8
50,377 + +0.2
50,378 + -2.4
50,385 - +0.3
50,473 - SGL_RS02075 0.14 -0.3
50,489 + SGL_RS02075 0.15 -1.1
50,614 + SGL_RS02075 0.22 -2.8
50,671 + SGL_RS02075 0.26 -2.6
50,682 + SGL_RS02075 0.26 -2.1
50,685 - SGL_RS02075 0.27 -2.0
50,722 - SGL_RS02075 0.29 -1.8
50,737 - SGL_RS02075 0.30 -1.1
50,798 + SGL_RS02075 0.33 -1.8
50,806 - SGL_RS02075 0.34 -2.8
50,806 - SGL_RS02075 0.34 -2.9
50,909 - SGL_RS02075 0.40 +0.4
51,042 - SGL_RS02075 0.48 -1.1
51,101 - SGL_RS02075 0.52 -1.9
51,126 + SGL_RS02075 0.53 -2.5
51,169 - SGL_RS02075 0.56 -0.5
51,323 + SGL_RS02075 0.65 -4.6
51,323 + SGL_RS02075 0.65 -0.7
51,323 + SGL_RS02075 0.65 -3.8
51,331 - SGL_RS02075 0.66 +0.2
51,331 - SGL_RS02075 0.66 -2.9
51,337 - SGL_RS02075 0.66 +1.0
51,394 + SGL_RS02075 0.70 +1.1
51,425 - SGL_RS02075 0.71 -0.5
51,874 + -0.3
51,982 + +1.7
51,990 - +0.2
52,221 - +0.3
52,221 - +1.2

Or see this region's nucleotide sequence