Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS02065 and SGL_RS02070 are separated by 24 nucleotides SGL_RS02070 and SGL_RS02075 are separated by 14 nucleotides SGL_RS02075 and SGL_RS18635 are separated by 364 nucleotides
SGL_RS02065: SGL_RS02065 - DUF4336 domain-containing protein, at 48,663 to 49,868
_RS02065
SGL_RS02070: SGL_RS02070 - photosystem II reaction center protein Psb28, at 49,893 to 50,231
_RS02070
SGL_RS02075: SGL_RS02075 - ATP-dependent DNA helicase, at 50,246 to 51,895
_RS02075
SGL_RS18635: SGL_RS18635 - IS630-like element ISTcSa family transposase, at 52,260 to 53,108
_RS18635
Position (kb)
50
51
52 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 49.276 kb on - strand, within SGL_RS02065 at 49.481 kb on + strand, within SGL_RS02065 at 49.565 kb on + strand, within SGL_RS02065 at 49.565 kb on + strand, within SGL_RS02065 at 49.736 kb on + strand, within SGL_RS02065 at 49.744 kb on - strand, within SGL_RS02065 at 49.816 kb on + strand at 49.821 kb on + strand at 49.830 kb on + strand at 50.143 kb on + strand, within SGL_RS02070 at 50.323 kb on - strand at 50.352 kb on - strand at 50.377 kb on + strand at 50.378 kb on + strand at 50.385 kb on - strand at 50.473 kb on - strand, within SGL_RS02075 at 50.489 kb on + strand, within SGL_RS02075 at 50.614 kb on + strand, within SGL_RS02075 at 50.671 kb on + strand, within SGL_RS02075 at 50.682 kb on + strand, within SGL_RS02075 at 50.685 kb on - strand, within SGL_RS02075 at 50.722 kb on - strand, within SGL_RS02075 at 50.737 kb on - strand, within SGL_RS02075 at 50.798 kb on + strand, within SGL_RS02075 at 50.806 kb on - strand, within SGL_RS02075 at 50.806 kb on - strand, within SGL_RS02075 at 50.909 kb on - strand, within SGL_RS02075 at 51.042 kb on - strand, within SGL_RS02075 at 51.101 kb on - strand, within SGL_RS02075 at 51.126 kb on + strand, within SGL_RS02075 at 51.169 kb on - strand, within SGL_RS02075 at 51.323 kb on + strand, within SGL_RS02075 at 51.323 kb on + strand, within SGL_RS02075 at 51.323 kb on + strand, within SGL_RS02075 at 51.331 kb on - strand, within SGL_RS02075 at 51.331 kb on - strand, within SGL_RS02075 at 51.337 kb on - strand, within SGL_RS02075 at 51.394 kb on + strand, within SGL_RS02075 at 51.425 kb on - strand, within SGL_RS02075 at 51.874 kb on + strand at 51.982 kb on + strand at 51.990 kb on - strand at 52.221 kb on - strand at 52.221 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 49,276 - SGL_RS02065 0.51 +0.6 49,481 + SGL_RS02065 0.68 +0.2 49,565 + SGL_RS02065 0.75 -0.3 49,565 + SGL_RS02065 0.75 -1.3 49,736 + SGL_RS02065 0.89 -0.3 49,744 - SGL_RS02065 0.90 +0.5 49,816 + +1.5 49,821 + +0.7 49,830 + -0.0 50,143 + SGL_RS02070 0.74 +1.4 50,323 - -0.6 50,352 - -0.8 50,377 + +0.2 50,378 + -2.4 50,385 - +0.3 50,473 - SGL_RS02075 0.14 -0.3 50,489 + SGL_RS02075 0.15 -1.1 50,614 + SGL_RS02075 0.22 -2.8 50,671 + SGL_RS02075 0.26 -2.6 50,682 + SGL_RS02075 0.26 -2.1 50,685 - SGL_RS02075 0.27 -2.0 50,722 - SGL_RS02075 0.29 -1.8 50,737 - SGL_RS02075 0.30 -1.1 50,798 + SGL_RS02075 0.33 -1.8 50,806 - SGL_RS02075 0.34 -2.8 50,806 - SGL_RS02075 0.34 -2.9 50,909 - SGL_RS02075 0.40 +0.4 51,042 - SGL_RS02075 0.48 -1.1 51,101 - SGL_RS02075 0.52 -1.9 51,126 + SGL_RS02075 0.53 -2.5 51,169 - SGL_RS02075 0.56 -0.5 51,323 + SGL_RS02075 0.65 -4.6 51,323 + SGL_RS02075 0.65 -0.7 51,323 + SGL_RS02075 0.65 -3.8 51,331 - SGL_RS02075 0.66 +0.2 51,331 - SGL_RS02075 0.66 -2.9 51,337 - SGL_RS02075 0.66 +1.0 51,394 + SGL_RS02075 0.70 +1.1 51,425 - SGL_RS02075 0.71 -0.5 51,874 + -0.3 51,982 + +1.7 51,990 - +0.2 52,221 - +0.3 52,221 - +1.2
Or see this region's nucleotide sequence