Experiment: high light; bubbling
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS01905 and SGL_RS01910 are separated by 606 nucleotides SGL_RS01910 and SGL_RS19400 overlap by 11 nucleotides SGL_RS19400 and SGL_RS01915 are separated by 41 nucleotides
SGL_RS01905: SGL_RS01905 - GDP-mannose 4,6-dehydratase, at 5,534 to 6,622
_RS01905
SGL_RS01910: SGL_RS01910 - photosystem II q(b) protein, at 7,229 to 8,311
_RS01910
SGL_RS19400: SGL_RS19400 - hypothetical protein, at 8,301 to 8,450
_RS19400
SGL_RS01915: SGL_RS01915 - biosynthetic arginine decarboxylase, at 8,492 to 10,471
_RS01915
Position (kb)
7
8
9 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 6.246 kb on + strand, within SGL_RS01905 at 6.355 kb on - strand, within SGL_RS01905 at 6.411 kb on - strand, within SGL_RS01905 at 6.414 kb on - strand, within SGL_RS01905 at 6.416 kb on - strand, within SGL_RS01905 at 6.429 kb on + strand, within SGL_RS01905 at 6.495 kb on + strand, within SGL_RS01905 at 6.495 kb on + strand, within SGL_RS01905 at 6.614 kb on - strand at 6.685 kb on + strand at 6.823 kb on + strand at 6.823 kb on + strand at 6.823 kb on + strand at 6.831 kb on - strand at 6.984 kb on - strand at 7.054 kb on + strand at 7.062 kb on - strand at 8.356 kb on + strand, within SGL_RS19400 at 8.455 kb on - strand at 8.455 kb on - strand at 8.505 kb on - strand at 8.587 kb on - strand at 8.803 kb on - strand, within SGL_RS01915 at 8.815 kb on + strand, within SGL_RS01915 at 8.815 kb on + strand, within SGL_RS01915 at 8.855 kb on - strand, within SGL_RS01915 at 9.067 kb on - strand, within SGL_RS01915 at 9.141 kb on - strand, within SGL_RS01915 at 9.169 kb on + strand, within SGL_RS01915 at 9.175 kb on - strand, within SGL_RS01915 at 9.223 kb on + strand, within SGL_RS01915 at 9.236 kb on - strand, within SGL_RS01915
Per-strain Table
Position Strand Gene LocusTag Fraction high light; bubbling remove 6,246 + SGL_RS01905 0.65 -2.6 6,355 - SGL_RS01905 0.75 -2.6 6,411 - SGL_RS01905 0.81 -3.2 6,414 - SGL_RS01905 0.81 -1.0 6,416 - SGL_RS01905 0.81 +0.4 6,429 + SGL_RS01905 0.82 -3.4 6,495 + SGL_RS01905 0.88 -3.4 6,495 + SGL_RS01905 0.88 -3.4 6,614 - -4.2 6,685 + -1.5 6,823 + -0.1 6,823 + +0.2 6,823 + +0.4 6,831 - -0.4 6,984 - +0.4 7,054 + -1.1 7,062 - -0.7 8,356 + SGL_RS19400 0.37 -1.6 8,455 - -0.8 8,455 - -0.7 8,505 - -0.6 8,587 - +0.1 8,803 - SGL_RS01915 0.16 +1.3 8,815 + SGL_RS01915 0.16 +0.5 8,815 + SGL_RS01915 0.16 +0.3 8,855 - SGL_RS01915 0.18 +0.1 9,067 - SGL_RS01915 0.29 +0.3 9,141 - SGL_RS01915 0.33 +0.6 9,169 + SGL_RS01915 0.34 -0.6 9,175 - SGL_RS01915 0.34 +0.5 9,223 + SGL_RS01915 0.37 -2.0 9,236 - SGL_RS01915 0.38 -2.1
Or see this region's nucleotide sequence