Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS01565

Experiment: high light; bubbling

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS01560 and SGL_RS01565 are separated by 51 nucleotidesSGL_RS01565 and SGL_RS01570 are separated by 14 nucleotidesSGL_RS01570 and SGL_RS01575 are separated by 260 nucleotides SGL_RS01560: SGL_RS01560 - efflux RND transporter periplasmic adaptor subunit, at 37,542 to 39,119 _RS01560 SGL_RS01565: SGL_RS01565 - CusA/CzcA family heavy metal efflux RND transporter, at 39,171 to 42,311 _RS01565 SGL_RS01570: SGL_RS01570 - hypothetical protein, at 42,326 to 42,805 _RS01570 SGL_RS01575: SGL_RS01575 - hypothetical protein, at 43,066 to 43,374 _RS01575 Position (kb) 39 40 41 42 43Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 38.176 kb on - strand, within SGL_RS01560at 38.178 kb on + strand, within SGL_RS01560at 38.186 kb on - strand, within SGL_RS01560at 38.186 kb on - strand, within SGL_RS01560at 38.186 kb on - strand, within SGL_RS01560at 38.186 kb on - strand, within SGL_RS01560at 38.186 kb on - strand, within SGL_RS01560at 38.344 kb on - strand, within SGL_RS01560at 38.369 kb on - strand, within SGL_RS01560at 38.387 kb on + strand, within SGL_RS01560at 38.387 kb on + strand, within SGL_RS01560at 38.468 kb on + strand, within SGL_RS01560at 38.546 kb on - strand, within SGL_RS01560at 38.658 kb on + strand, within SGL_RS01560at 38.705 kb on - strand, within SGL_RS01560at 38.748 kb on - strand, within SGL_RS01560at 38.774 kb on - strand, within SGL_RS01560at 38.824 kb on + strand, within SGL_RS01560at 38.831 kb on + strand, within SGL_RS01560at 38.834 kb on - strand, within SGL_RS01560at 38.939 kb on + strand, within SGL_RS01560at 38.954 kb on - strand, within SGL_RS01560at 39.072 kb on - strandat 39.088 kb on + strandat 39.122 kb on + strandat 39.152 kb on - strandat 39.206 kb on + strandat 39.253 kb on + strandat 39.261 kb on - strandat 39.267 kb on + strandat 39.274 kb on + strandat 39.334 kb on + strandat 39.340 kb on - strandat 39.342 kb on - strandat 39.498 kb on - strand, within SGL_RS01565at 39.509 kb on + strand, within SGL_RS01565at 39.517 kb on - strand, within SGL_RS01565at 39.522 kb on - strand, within SGL_RS01565at 39.609 kb on - strand, within SGL_RS01565at 39.714 kb on + strand, within SGL_RS01565at 39.741 kb on - strand, within SGL_RS01565at 39.767 kb on - strand, within SGL_RS01565at 39.769 kb on + strand, within SGL_RS01565at 39.770 kb on + strand, within SGL_RS01565at 39.998 kb on - strand, within SGL_RS01565at 39.998 kb on - strand, within SGL_RS01565at 39.998 kb on - strand, within SGL_RS01565at 39.998 kb on - strand, within SGL_RS01565at 40.002 kb on + strand, within SGL_RS01565at 40.010 kb on - strand, within SGL_RS01565at 40.055 kb on + strand, within SGL_RS01565at 40.062 kb on + strand, within SGL_RS01565at 40.063 kb on - strand, within SGL_RS01565at 40.063 kb on - strand, within SGL_RS01565at 40.064 kb on - strand, within SGL_RS01565at 40.064 kb on - strand, within SGL_RS01565at 40.079 kb on + strand, within SGL_RS01565at 40.079 kb on + strand, within SGL_RS01565at 40.146 kb on - strand, within SGL_RS01565at 40.230 kb on + strand, within SGL_RS01565at 40.240 kb on - strand, within SGL_RS01565at 40.293 kb on - strand, within SGL_RS01565at 40.339 kb on + strand, within SGL_RS01565at 40.339 kb on + strand, within SGL_RS01565at 40.353 kb on + strand, within SGL_RS01565at 40.373 kb on + strand, within SGL_RS01565at 40.446 kb on + strand, within SGL_RS01565at 40.487 kb on - strand, within SGL_RS01565at 40.527 kb on + strand, within SGL_RS01565at 40.544 kb on - strand, within SGL_RS01565at 40.663 kb on + strand, within SGL_RS01565at 40.670 kb on - strand, within SGL_RS01565at 40.754 kb on + strand, within SGL_RS01565at 40.762 kb on + strand, within SGL_RS01565at 40.819 kb on + strand, within SGL_RS01565at 40.819 kb on + strand, within SGL_RS01565at 40.819 kb on + strand, within SGL_RS01565at 40.819 kb on + strand, within SGL_RS01565at 40.819 kb on + strand, within SGL_RS01565at 40.827 kb on - strand, within SGL_RS01565at 40.827 kb on - strand, within SGL_RS01565at 40.827 kb on - strand, within SGL_RS01565at 40.827 kb on - strand, within SGL_RS01565at 40.827 kb on - strand, within SGL_RS01565at 40.827 kb on - strand, within SGL_RS01565at 40.897 kb on - strand, within SGL_RS01565at 40.911 kb on + strand, within SGL_RS01565at 40.946 kb on - strand, within SGL_RS01565at 40.975 kb on - strand, within SGL_RS01565at 40.999 kb on + strand, within SGL_RS01565at 41.004 kb on + strand, within SGL_RS01565at 41.007 kb on - strand, within SGL_RS01565at 41.159 kb on + strand, within SGL_RS01565at 41.221 kb on + strand, within SGL_RS01565at 41.240 kb on - strand, within SGL_RS01565at 41.283 kb on - strand, within SGL_RS01565at 41.310 kb on + strand, within SGL_RS01565at 41.318 kb on - strand, within SGL_RS01565at 41.353 kb on - strand, within SGL_RS01565at 41.393 kb on + strand, within SGL_RS01565at 41.500 kb on - strand, within SGL_RS01565at 41.580 kb on + strand, within SGL_RS01565at 41.580 kb on + strand, within SGL_RS01565at 41.583 kb on - strand, within SGL_RS01565at 41.583 kb on - strand, within SGL_RS01565at 41.837 kb on + strand, within SGL_RS01565at 42.018 kb on + strandat 42.032 kb on - strandat 42.037 kb on - strandat 42.037 kb on - strandat 42.702 kb on + strand, within SGL_RS01570at 42.735 kb on + strand, within SGL_RS01570at 43.098 kb on + strand, within SGL_RS01575at 43.169 kb on + strand, within SGL_RS01575at 43.200 kb on + strand, within SGL_RS01575at 43.278 kb on - strand, within SGL_RS01575at 43.278 kb on - strand, within SGL_RS01575at 43.278 kb on - strand, within SGL_RS01575at 43.282 kb on + strand, within SGL_RS01575at 43.290 kb on - strand, within SGL_RS01575at 43.300 kb on + strand, within SGL_RS01575

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Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
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38,176 - SGL_RS01560 0.40 -1.9
38,178 + SGL_RS01560 0.40 -4.5
38,186 - SGL_RS01560 0.41 -3.2
38,186 - SGL_RS01560 0.41 -3.1
38,186 - SGL_RS01560 0.41 -4.6
38,186 - SGL_RS01560 0.41 -3.0
38,186 - SGL_RS01560 0.41 -4.2
38,344 - SGL_RS01560 0.51 -2.7
38,369 - SGL_RS01560 0.52 -2.6
38,387 + SGL_RS01560 0.54 -2.9
38,387 + SGL_RS01560 0.54 -2.9
38,468 + SGL_RS01560 0.59 -3.1
38,546 - SGL_RS01560 0.64 -1.5
38,658 + SGL_RS01560 0.71 -1.9
38,705 - SGL_RS01560 0.74 -2.7
38,748 - SGL_RS01560 0.76 -5.0
38,774 - SGL_RS01560 0.78 -2.6
38,824 + SGL_RS01560 0.81 -3.2
38,831 + SGL_RS01560 0.82 -4.6
38,834 - SGL_RS01560 0.82 -3.3
38,939 + SGL_RS01560 0.89 -4.8
38,954 - SGL_RS01560 0.89 -4.4
39,072 - -4.2
39,088 + -2.4
39,122 + -2.9
39,152 - -3.4
39,206 + -2.8
39,253 + -0.4
39,261 - -2.2
39,267 + -2.2
39,274 + -2.8
39,334 + -3.4
39,340 - +0.9
39,342 - -5.5
39,498 - SGL_RS01565 0.10 -3.3
39,509 + SGL_RS01565 0.11 -3.9
39,517 - SGL_RS01565 0.11 -4.6
39,522 - SGL_RS01565 0.11 -4.0
39,609 - SGL_RS01565 0.14 -4.0
39,714 + SGL_RS01565 0.17 -4.6
39,741 - SGL_RS01565 0.18 -3.5
39,767 - SGL_RS01565 0.19 -4.1
39,769 + SGL_RS01565 0.19 -4.9
39,770 + SGL_RS01565 0.19 -4.4
39,998 - SGL_RS01565 0.26 -3.7
39,998 - SGL_RS01565 0.26 -3.5
39,998 - SGL_RS01565 0.26 -5.4
39,998 - SGL_RS01565 0.26 -2.3
40,002 + SGL_RS01565 0.26 -5.0
40,010 - SGL_RS01565 0.27 -3.4
40,055 + SGL_RS01565 0.28 -3.5
40,062 + SGL_RS01565 0.28 -4.5
40,063 - SGL_RS01565 0.28 -5.0
40,063 - SGL_RS01565 0.28 -1.6
40,064 - SGL_RS01565 0.28 -2.2
40,064 - SGL_RS01565 0.28 -4.8
40,079 + SGL_RS01565 0.29 -2.8
40,079 + SGL_RS01565 0.29 -1.0
40,146 - SGL_RS01565 0.31 -4.3
40,230 + SGL_RS01565 0.34 -1.9
40,240 - SGL_RS01565 0.34 -2.4
40,293 - SGL_RS01565 0.36 -2.1
40,339 + SGL_RS01565 0.37 -5.9
40,339 + SGL_RS01565 0.37 -3.5
40,353 + SGL_RS01565 0.38 -2.8
40,373 + SGL_RS01565 0.38 -4.0
40,446 + SGL_RS01565 0.41 -5.8
40,487 - SGL_RS01565 0.42 -1.5
40,527 + SGL_RS01565 0.43 -4.5
40,544 - SGL_RS01565 0.44 -2.8
40,663 + SGL_RS01565 0.48 -3.1
40,670 - SGL_RS01565 0.48 -4.0
40,754 + SGL_RS01565 0.50 -2.5
40,762 + SGL_RS01565 0.51 -2.3
40,819 + SGL_RS01565 0.52 -3.2
40,819 + SGL_RS01565 0.52 -0.9
40,819 + SGL_RS01565 0.52 -4.5
40,819 + SGL_RS01565 0.52 -4.3
40,819 + SGL_RS01565 0.52 -3.5
40,827 - SGL_RS01565 0.53 -3.3
40,827 - SGL_RS01565 0.53 -5.1
40,827 - SGL_RS01565 0.53 -5.1
40,827 - SGL_RS01565 0.53 -2.7
40,827 - SGL_RS01565 0.53 -1.4
40,827 - SGL_RS01565 0.53 -2.5
40,897 - SGL_RS01565 0.55 -3.3
40,911 + SGL_RS01565 0.55 -2.0
40,946 - SGL_RS01565 0.57 -3.2
40,975 - SGL_RS01565 0.57 -5.2
40,999 + SGL_RS01565 0.58 -4.1
41,004 + SGL_RS01565 0.58 -5.6
41,007 - SGL_RS01565 0.58 -3.6
41,159 + SGL_RS01565 0.63 -3.4
41,221 + SGL_RS01565 0.65 -2.1
41,240 - SGL_RS01565 0.66 -4.8
41,283 - SGL_RS01565 0.67 -2.1
41,310 + SGL_RS01565 0.68 -4.4
41,318 - SGL_RS01565 0.68 -1.6
41,353 - SGL_RS01565 0.69 -1.6
41,393 + SGL_RS01565 0.71 -1.7
41,500 - SGL_RS01565 0.74 -3.4
41,580 + SGL_RS01565 0.77 -4.0
41,580 + SGL_RS01565 0.77 -3.0
41,583 - SGL_RS01565 0.77 -4.2
41,583 - SGL_RS01565 0.77 -4.2
41,837 + SGL_RS01565 0.85 -0.7
42,018 + -3.1
42,032 - -3.1
42,037 - -4.3
42,037 - -5.0
42,702 + SGL_RS01570 0.78 -0.3
42,735 + SGL_RS01570 0.85 -0.6
43,098 + SGL_RS01575 0.10 -0.8
43,169 + SGL_RS01575 0.33 -0.3
43,200 + SGL_RS01575 0.43 -0.1
43,278 - SGL_RS01575 0.69 +0.1
43,278 - SGL_RS01575 0.69 -0.6
43,278 - SGL_RS01575 0.69 -0.1
43,282 + SGL_RS01575 0.70 +0.9
43,290 - SGL_RS01575 0.72 -1.1
43,300 + SGL_RS01575 0.76 -1.3

Or see this region's nucleotide sequence