Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS00795

Experiment: high light; bubbling

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntSGL_RS19380 and SGL_RS00785 are separated by 31 nucleotidesSGL_RS00785 and SGL_RS00790 are separated by 191 nucleotidesSGL_RS00790 and SGL_RS00795 are separated by 163 nucleotidesSGL_RS00795 and SGL_RS00800 are separated by 367 nucleotidesSGL_RS00800 and SGL_RS00805 are separated by 10 nucleotides SGL_RS19380: SGL_RS19380 - hypothetical protein, at 31,641 to 31,790 _RS19380 SGL_RS00785: SGL_RS00785 - hypothetical protein, at 31,822 to 32,097 _RS00785 SGL_RS00790: SGL_RS00790 - hypothetical protein, at 32,289 to 32,483 _RS00790 SGL_RS00795: SGL_RS00795 - DUF3854 domain-containing protein, at 32,647 to 35,523 _RS00795 SGL_RS00800: SGL_RS00800 - putative addiction module antidote protein, at 35,891 to 36,178 _RS00800 SGL_RS00805: SGL_RS00805 - type II toxin-antitoxin system RelE/ParE family toxin, at 36,189 to 36,479 _RS00805 Position (kb) 32 33 34 35 36Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 31.669 kb on + strand, within SGL_RS19380at 31.754 kb on + strand, within SGL_RS19380at 31.913 kb on - strand, within SGL_RS00785at 31.920 kb on + strand, within SGL_RS00785at 32.008 kb on + strand, within SGL_RS00785at 32.039 kb on - strand, within SGL_RS00785at 35.587 kb on - strandat 35.917 kb on + strandat 35.979 kb on + strand, within SGL_RS00800at 35.979 kb on + strand, within SGL_RS00800at 36.068 kb on + strand, within SGL_RS00800at 36.076 kb on - strand, within SGL_RS00800at 36.186 kb on + strandat 36.273 kb on - strand, within SGL_RS00805at 36.295 kb on - strand, within SGL_RS00805at 36.295 kb on - strand, within SGL_RS00805at 36.338 kb on + strand, within SGL_RS00805at 36.375 kb on - strand, within SGL_RS00805at 36.441 kb on - strand, within SGL_RS00805at 36.441 kb on - strand, within SGL_RS00805at 36.461 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction high light; bubbling
remove
31,669 + SGL_RS19380 0.19 -2.1
31,754 + SGL_RS19380 0.75 -1.1
31,913 - SGL_RS00785 0.33 -0.6
31,920 + SGL_RS00785 0.36 -0.6
32,008 + SGL_RS00785 0.67 +0.5
32,039 - SGL_RS00785 0.79 +0.9
35,587 - -1.6
35,917 + +1.2
35,979 + SGL_RS00800 0.31 +2.6
35,979 + SGL_RS00800 0.31 +1.0
36,068 + SGL_RS00800 0.61 +4.9
36,076 - SGL_RS00800 0.64 +3.9
36,186 + +3.5
36,273 - SGL_RS00805 0.29 -0.4
36,295 - SGL_RS00805 0.36 +0.1
36,295 - SGL_RS00805 0.36 -1.6
36,338 + SGL_RS00805 0.51 +0.1
36,375 - SGL_RS00805 0.64 -1.6
36,441 - SGL_RS00805 0.87 -0.1
36,441 - SGL_RS00805 0.87 -1.6
36,461 - -0.5

Or see this region's nucleotide sequence